Bay Area Hotels: 2026 Top 10 Bay Area Hotels with Limited-Time Deals @Expedia

A harbor with boats, buildings, and a mountain in the background.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Where to stay in Bay Area

Find the best Bay Area areas for the activities you enjoy most.

A coastal cityscape with a harbor, mountains in the background, and a partly cloudy sky.

Yunokawacho

If you're spending time in Yunokawacho, check out sights like Yunokawa Onsen or Hakodate Tropical Botanical Garden and hop on the metro to see more of the city at Yunokawa-Onsen Station or Yunokawa Station.

See properties

A large building with a balcony, surrounded by well-maintained gardens and a hill in the background.

Motomachi

Discover Motomachi, memorable for its restaurants. Popular attractions in Motomachi include Old British Consulate of Hakodate and Old Public Hall of Hakodate Ward, and you can see more of the area by hopping on the metro at Suehirochō Station.

See properties

A coastal city at dusk with a harbor, bridges, and illuminated buildings.

Shinkawachō

Even though there aren't top sights in Shinkawachō, you can explore the larger area and take in top sights like Ekini Fish Market. Jump on the metro at Chitose Station to see more of the city.

See properties

Kikyō

Even though there aren't top sights in Kikyō, you can explore the larger area and take in top sights like Fort Goryokaku. Jump on the metro at Kikyō Station to see more of the city.

See properties

Top Bay Area Hotel Reviews

Hakodate Kokusai Hotel

10/10 Excellent

"Convenient location within walking distance from train station and convenience store. Excellent breakfast buffet includes make your own chirashi bowls and fresh grilled beef."

Hotel ＆ Spa Century Marina Hakodate

10/10 Excellent

"Yah, the glowing online reviews are pretty accurate. The breakfast at this place surpasses the ones in Vegas easily. Ample seafood including ikura, sake, champagne.. it was bonkers. We also thoroughly enjoyed the Onsen, especially the outdoor Bossanova lounge. Was surreal to see steam rising from the bathes while you gazed at the stars above in the night sky. Probably the only con is that the buffet was so awesome there really wasn’t a point to eat at the stellar Hakodate morning market, which is a very first world problem! I’ve already heartily recommended this place to my friends and family."

HOTEL MYSTAYS Hakodate Station

8/10 Good

"My sister recommended to stay this hotel. The location of the hotel was excellent and the cost was reasonable. The breakfast was average as a business hotel. If arrange the tables in the cafeteria with plenty of space between them, it was easier to get around. There were too few AC outlets in the room. I could not recharge a cellphone, a power pack, and a computer at the same time. It was convenient to be able to leave my luggage for free after checking out."

Four Points Flex by Sheraton Hakodate Station

8/10 Good

"Pretty central, not far from the JR rail station and the tram line, and there's a good supermarket almost next door. The amenities are very recently installed, so all very tidy, modern, clean and in good working order. The vista (street view) from the window was better than what I usually get at other Japanese hotels, often just a wall from an adjacent building. The laundry machines can't handle several kilos, so it took some cycles to get them properly dry, several trips from my room to the laundry. The breakfast of egg, potato salad and garnishings is minimalist and the dining area a bit cavernous, but there's plenty of toast if one wants to make more. The breakfast lady in charge is a bit huffy, being alone to handle everyone, so I forgive her, since I myself had to fend for myself at work in my younger years. I also needed an early cab for an early flight, so I had the front desk book it days ahead. The desk clerk by the name Hoshimoto was very helpful in that request, anticipating my needs, speaking good English, taking note that I would be away for 2 days in Furano and then returning for 1 more night at this very same hotel. To my pleasant surprise when back from Furano, he remembered details of my request as the day of the cab neared. Overall, a good hotel if you want a basic, fuss-free, clean place near the JR station."

Frequently asked questions

What is Bay Area like?

Guests are sure to enjoy their time checking out all that Hakodate's Bay Area neighbourhood has to offer. Make sure that you visit Kanemori Red Brick Warehouse and Hakodate Takadaya Kahei Museum as part of your Bay Area travel plans.

What's a favourite hotel to stay in Bay Area?

Based on our traveller data, HakoBA Hakodate by THE SHARE HOTELS is one of the top choices for your stay in Bay Area. This hotel offers a restaurant and a bar. Other good options for your stay in the area include コンドミニアムビューマウント函館 and T9 HAKODATE.

How many hotels can I expect to find in Bay Area?

When you want to put your feet up after a day of exploring the sights in Hakodate, you can choose from 10 Expedia hotels and other accommodation options in Bay Area.

If I need to cancel my hotel reservation in Bay Area, will I receive a refund?

Yes! The majority of hotel reservations are refundable if you cancel prior to the hotel's cancellation deadline, which in most cases is within 24 or 48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might be able to cancel it and receive a refund within 24 hours of booking. Put your dates in and click on "Search", then you can use the "fully refundable" filter to get the best options available in Bay Area.

What is there to do around this Hakodate neighbourhood?

A few attractions you might want to check out while you're in Bay Area are Kanemori Red Brick Warehouse and Hakodate Takadaya Kahei Museum. While you're out sightseeing, Sakamoto Ryoma Museum and Hakodate City Museum of Photographic History are a couple of additional sights to visit in Hakodate.

Bay Area hotels in Hakodate

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Bay Area hotels

1. HakoBA Hakodate by THE SHARE HOTELS

2. NIPPONIA HOTEL Hakodate Port Town

3. T9 HAKODATE

4. コンドミニアム ビューマウント函館

5. La Vista Hakodate Bay

6. Hotel ＆ Spa Century Marina Hakodate

7. Yunokawa Kagura

8. Hakodate Kokusai Hotel

9. JR Inn Hakodate

10. Hotel Enoe Hakodate

11. Premier Hotel - Cabin President - Hakodate

12. Tokyu Stay Hakodate Asaichi Akarinoyu

13. Toyoko Inn Hokkaido Hakodate Ekimae Asaichi

14. La Jolie Motomachi

15. La Vista Hakodate Bay ANNEX

16. fav HAKODATE

17. La'gent Stay Hakodate Ekimae

18. Hakodate Danshaku Club Hotel and Resorts

19. APA Hotel Hakodate Ekimae

20. Villa Concordia Resort & Spa

Where to stay in Bay Area

Yunokawacho

Motomachi

Shinkawachō

Kikyō

Top Bay Area Hotel Reviews

Hakodate Kokusai Hotel

Frequently asked questions

4. コンドミニアムビューマウント函館