Best Agathonisi Hotels in 2026 from HK$521 - Fully Refundable Options

A coastal town with buildings on a hillside, a clear blue sea, and a boat anchored near the shore.

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Our top choices for Agathonisi hotels

A row of wooden beach umbrellas with white cushions on a sandy beach, overlooking the sea.

A beach with rows of sunbeds and thatched umbrellas, a clear blue sea, and mountains in the background.

A covered outdoor seating area with wooden flooring, white cushioned chairs, and tables.

A serene outdoor setting with a pool, a person in a white dress, and a view of the sea.

1. Proteas Blu Resort - Adults Only

Samos

Artsem

HK$1,300

HK$1,556 total

includes taxes & fees

13 Oct - 14 Oct

A modern resort with a central pool, lounge areas, and mountain views.

A beachside lounge area with outdoor seating, a large umbrella, and a view of the sea.

A beachside resort with outdoor seating areas, umbrellas, and a view of the sea.

A bar area with a wooden counter and stools.

2. Casa Cook Samos

Samos

ercan

HK$1,808

HK$2,112 total

includes taxes & fees

28 Oct - 29 Oct

A person in a colorful swimsuit standing on a balcony overlooking the ocean.

A beach with clear blue water, a sandy shore, and a few boats. There are buildings with colorful roofs in the background.

A coastal residential area with multi-story buildings, a swimming pool, and a view of the sea and a mountain in the distance.

An indoor swimming pool with lounge chairs, a table, and a ceiling with wooden beams.

3. Hydrele Beach Hotel

Samos

armida

HK$773

HK$934 total

includes taxes & fees

13 Oct - 14 Oct

A beach with rows of beige lounge chairs and umbrellas, a clear sky, and a calm sea with a distant mountain.

A beachside lounge with white umbrellas and beige lounge chairs, a wooden deck, and a view of the sea and a pier in the background.

A coastal hotel with a swimming pool, surrounded by greenery and overlooking the sea.

A poolside table with a meal, a drink, and a view of a pool and mountains.

4. Doryssa Seaside Resort

Samos

Athanasios

HK$1,387

HK$1,651 total

includes taxes & fees

13 Oct - 14 Oct

A wooden table with a bottle of wine, two glasses, and a bowl of fruit by the seaside.

A balcony with a view of the sea and a mountain, potted plants, and a utility pole.

An aerial view of a coastal town with white buildings, a marina, and a hillside.

A room with a view of the sea through an open door.

5. Aegean Muses Villas

Lipsoi

Kaj Mikael

HK$1,225

HK$1,408 total

includes taxes & fees

14 Oct - 15 Oct

An aerial view of a coastal property with multiple buildings, including a large house with a red roof and several smaller structures. There is a dirt path leading to the buildings, and the area is surrounded by fields and trees.

An outdoor seating area with tables and chairs, a covered seating area, and a pool.

A modern living room with a grey sofa set, a wooden coffee table, and a stone accent wall.

A modern living room with a dark grey sectional sofa, a wooden coffee table, and a staircase in the background.

6. Samos Blue Sea

Samos

"When we came into sign in the proprietor was having a bad day and was chain-smoking and we are all allergic to cigarette smoke so that made it a little uncomfortable and when we tried to get the Internet to work, it took a while before the main person that did the Internet was to report in for work and he said he was going to fix it at night, which didn’t happen and then at 9 o’clock in the evening he finally started drilling on the last day that we were there to get the Internet in a better...

ROBERT

HK$651

HK$757 total

includes taxes & fees

13 Oct - 14 Oct

An infinity pool with lounge chairs and a view of a coastal town.

A modern multi-story building with a landscaped courtyard, featuring a mix of flat and sloped roofs, and a variety of plants and trees.

A modern interior with a dark wood reception desk, a sofa, a large abstract painting, and a potted plant.

A modern outdoor seating area with a view of a coastal town and mountains.

7. Nirema Hotel & Spa Samos - MGallery Collection (opening Q3 2026)

Samos

HK$1,228

HK$1,477 total

includes taxes & fees

23 Oct - 24 Oct

A small round table with two white cups and saucers, a vase with a pink flower, and a window with a view of buildings.

A garden with large terracotta pots containing various plants, including a prominent tree-like plant and some flowering plants.

A modern interior with a staircase, a potted plant, and a large vase.

A hotel room with a bed, desk, laptop, and a sofa.

8. Hotel Aria

Samos

ILYAS

HK$460

HK$521 total

includes taxes & fees

13 Oct - 14 Oct

A terrace with a table set for dining, overlooking a hillside with trees and a building.

A swimming pool reflecting the sunset with a mountain backdrop and a building on the left.

A living room with two sofas, a coffee table, and a TV. There are bookshelves and a lamp.

A bar area with wooden chairs and a glass table, a stone wall with shelves of bottles, and a large window with a view.

9. Virginia Hotel

Samos

Osman

HK$715

HK$923 total

includes taxes & fees

17 Oct - 18 Oct

A two-story building with a white facade, a balcony with balustrades, and a staircase with a yellow handrail.

A kitchen with white cabinets, a black stove, and a chair.

A staircase with a marble finish leading to an upper floor.

A living room with a sofa set, a coffee table, and a TV stand.

10. Villa de Elesia

Lipsoi

HK$2,242

HK$2,551 total

includes taxes & fees

11 Nov - 12 Nov

A hotel room with a bed, a desk, a chair, a table, and a balcony with a view of the sea.

A compact kitchen with a stove, sink, and a coffee maker.

A hotel room with a wooden bed, a desk with a chair, a television, a window with curtains, and a balcony.

A room with a wooden wardrobe, a vanity with a mirror, a small bench, and a kitchenette in the background.

11. Jimmy's apartments

Samos

Osman

HK$578

HK$896 total

includes taxes & fees

13 Oct - 14 Oct

A swimming pool with lounge chairs, palm trees, and a mountain in the background.

An outdoor pool area with lounge chairs and a bar.

A hotel room with a bed, a nightstand, a wall-mounted TV, and a door leading to an outdoor area.

A hotel room with a bed, a desk, a chair, a mirror, and a wall with pictures.

12. Anna Studios

Samos

Colin

HK$562

HK$834 total

includes taxes & fees

13 Oct - 14 Oct

An outdoor cafe with tables, chairs, potted plants, and a tree with ripe oranges.

A spa area with a hot tub, two bean bag chairs, and several potted plants.

A modern kitchen with dark cabinetry, a central island, and two chairs.

A modern interior with a central seating area, a kitchen in the background, and large windows.

13. Doryssa Theorem Hotel

Samos

Nicole

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Stay near popular Agathonisi attractions

Spiliá

Why not spend a lazy afternoon at Spiliá during your trip to Agathonisi?

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Pálos

Why not spend a lazy afternoon at Pálos during your trip to Agathonisi?

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Tsankári

Why not spend a lazy afternoon at Tsankári during your trip to Agathonisi?

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Vathý Pigádi

Why not spend a lazy afternoon at Vathý Pigádi during your trip to Agathonisi?

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Gadourólakkos

Why not spend a lazy afternoon at Gadourólakkos during your trip to Agathonisi?

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Learn more about Agathonisi

Escape to this tranquil island where the pristine waters of Papa Beach invite swimming and snorkelling in crystal-clear seas. Explore the charming coves of Pálos and Spiliá, then wander to Vathý Pigádi where local fishermen bring in the day's catch.

See all hotels in Agathonisi

Top Agathonisi Hotel Reviews

Doryssa Lithos Hotel

10/10 Excellent

"Lovely hotel, very clean, friendly staff and great view over the sea."

Doryssa Seaside Resort

10/10 Excellent

"A gorgeous property, great location, courteous staff… would def stay there again!! Perfect room!!😊"

Virginia Hotel

10/10 Excellent

"We couldn’t fault our stay with Virginia Hotel . Even though only 2 nights we were pleasantly surprised from start to finish . Housekeeping was daily , fresh towels amenities replenished n staff were super good & efficient. We checked in very late at night n were worried if there would be anyone there @ midnight . Sofia greeted us, checked us in ran thru procedures professionally n confidently . Breakfast was plentiful & good variety . We were attended by Anna , made us feel like family and helped with the surrounds of the town & pointed places for us to see . She had a great sense of humour, chatted to all guests & if they wanted anything else she was happy to arrange. Hats of to her The Virginia Hotel is lucky to have staff that are dedicated to their jobs especially Anna … wish I could stay I’ll be back , age prevails but I’ll definitely recommend this hotel in Samos . Anna & Ennio from Sydney Australia"

Sunrise Hotel

10/10 Excellent

"This place is absolutely beautiful. Our room was perfect, the staff was perfect, the view was perfect and being able to walk within 5 minutes to some amazing food right on the water was also......perfect!! If we could give it 6 stars, we would. They've got a pool on the property as well, the breakfast was great and again, the people that work there are literally THE BEST!! If we come back to Samos, we will not stay anywhere else."

Doryssa Method Hotel

8/10 Good

"ΠΟΛΥ ΚΑΘΑΡΟ ΔΩΜΑΤΙΟ ΜΠΑΛΚΟΝΙ ΜΕ ΚΑΚΗ ΘΕΑ ΚΑΙ ΟΣΜΕΣ ΑΠΟ ΓΕΙΤΟΝΙΚΕΣ ΤΑΒΕΡΝΕΣ ΚΛΙΜΑΤΙΣΜΟΣ ΔΙΟΡΘΩΘΗΚΕ ΜΕΤΑ ΑΠΟ ΠΑΡΑΤΗΡΗΣΗ ΜΑΣ ΣΤΗ ΡΕΣΕΨΙΟΝ"

Nafsika Sea View Apartments

10/10 Excellent

"The apartment was spotless with a beautiful view. Staff were friendly and helpful. The kitchen area was well equipped. We enjoyed the private sun terrace and swimming/snorkelling. We visited a fab restaurant in the nearby village, Lidl wasn’t far away and a visit to Kasonisi island was great. You’ll definitely need a car but we would totally recommend staying here."

Klima Paradise

10/10 Excellent

"Location, staff, breakfast were lovely!"

Doryssa Boutique Hotel

10/10 Excellent

"The staff really make this hotel. Attentive, friendly and an absolute joy. Thank you for an amazing stay!"

Kontemare Seascape

8/10 Good

"We absolutely loved our stay at Kontemare Seascape. The villa was spotless, beautifully designed, luxurious, and very practical for a family stay. Everything felt new, clean, and well taken care of. The private pool and air conditioning made the stay extremely comfortable, and the beach is only about 100 steps away. Balos Beach was a wonderful surprise: peaceful, quiet, uncrowded, and beautiful. There are also several restaurants nearby, and every place we tried was excellent. The whole area has a calm, relaxing, authentic feeling. This was one of the most peaceful and comfortable stays of our trip. We slept very well, enjoyed the pool and the sea, and would happily come back. One small suggestion: because the villa is surrounded by nature, the pool can collect insects/leaves quickly. It was clean when we arrived, but by the next morning it needed attention again, so slightly more frequent pool cleaning would make the experience even better. Overall, a beautiful villa in a very special and peaceful location. Highly recommended."

More cheap stays in Agathonisi

Mykali

Pythagorion Samos North Aegean Islands

HK$551

HK$606 total

15 Oct - 16 Oct

includes taxes & fees

Doryssa Lithos Hotel

Pythagorion Samos

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9.6/10 Exceptional! (63 reviews)

Glicorisa Beach

Pythagorio Samos Samos Island

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9.2/10 Wonderful! (27 reviews)

Sunrise Hotel

Ireon Samos Samos Island

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9/10 Wonderful! (53 reviews)

Pegasus

Roikou 4 Samos Samos Island

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8.4/10 Very good! (67 reviews)

Hotel Apollon

Pythagorio Samos Samos Island

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Frequently asked questions

What's the best place for a stay in Agathonisi?

Located 16 mi (25.7 km) from the heart of Agathonisi, Casa Cook Samos is a top choice for your stay, based on our traveller data. Two other choices for your visit to the area are Hydrele Beach Hotel and Proteas Blu Resort - Adults Only. See all available top hotels, or vacation rentals in Agathonisi.

What are some of the best holiday rentals that Agathonisi has to offer?

Romantic Villa Glyfos: This holiday home rental outside of Agathonisi is equipped with a garden, air conditioning and laundry facilities to help you feel comfortable during your stay. See all vacation rentals in Agathonisi.

If I need to cancel my hotel reservation in Agathonisi, will I receive a refund?

Yes, most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which often is within 24-48 hours of your scheduled arrival. If you have a non-refundable reservation, you might be able to still cancel and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Agathonisi.

How is it to stay in Agathonisi?

Visitors will definitely enjoy all that Agathonisi has to offer. There are 158 hotels and other accommodation options in the surrounding area. Find out more about Agathonisi.

What should I do while I'm visiting Agathonisi?

Favourite places to visit include Spiliá, Gadourólakkos and Tsankári. A couple of additional sights to add to your itinerary are Pálos and Vathý Pigádi. Take a look at what more there is to see and do in Expedia's Agathonisi guide.

What's the weather like in Agathonisi?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Agathonisi is 839 mm.

Agathonisi hotels from HK$521

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Agathonisi

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Agathonisi hotels

1. Proteas Blu Resort - Adults Only

2. Casa Cook Samos

3. Hydrele Beach Hotel

4. Doryssa Seaside Resort

5. Aegean Muses Villas

6. Samos Blue Sea

7. Nirema Hotel & Spa Samos - MGallery Collection (opening Q3 2026)

8. Hotel Aria

9. Virginia Hotel

10. Villa de Elesia

11. Jimmy's apartments

12. Anna Studios

13. Doryssa Theorem Hotel

Stay near popular Agathonisi attractions

Spiliá

Pálos

Tsankári

Vathý Pigádi

Gadourólakkos

Learn more about Agathonisi

Top Agathonisi Hotel Reviews

Doryssa Lithos Hotel

Doryssa Seaside Resort

Virginia Hotel

Sunrise Hotel

Doryssa Method Hotel

Nafsika Sea View Apartments

Klima Paradise

Doryssa Boutique Hotel

Kontemare Seascape

More cheap stays in Agathonisi

Mykali

Doryssa Lithos Hotel

Glicorisa Beach

Sunrise Hotel

Pegasus

Hotel Apollon

Frequently asked questions

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