Best Isahaya Hotels in 2026 from HK$316 - Fully Refundable Options

An aerial view of a rural landscape with fields, a small town, and distant mountains.

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Our top choices for Isahaya hotels

A multi-story building with a flat facade, balconies, and a parking lot in front.

A room with two ping pong tables, a red chair, and exercise bikes.

A hotel room with two beds, a desk with a computer, a sink, and an air conditioning unit.

A spacious lobby with a reception desk, leather seating area, and ping pong tables.

1. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

HK$448

HK$493 total

24 Sept - 25 Sept

A hotel room with a bed, a desk, a chair, a window with a city view, and a wall-mounted TV.

A reception desk with a computer, a plant, and a cash register.

A restaurant with a buffet counter, wooden flooring, and pendant lighting.

A laundry facility with four washing machines and four dryers, each labeled with a number.

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

HK$572

HK$629 total

12 Oct - 13 Oct

A hotel lobby with a reception desk, seating area, and large windows.

A buffet line with various food items and condiments.

A hotel room with two beds, a desk, a chair, an air conditioning unit, and a painting on the wall.

3. Hotel Route-Inn Isahaya Inter

Isahaya

?????

HK$637

HK$706 total

30 Sept - 1 Oct

A modern building entrance with a set of stairs leading to a glass door entrance.

A reception area with a wooden reception desk, a seating area with a sofa, and a bookshelf.

A modern hotel lobby with wooden tables and chairs, a reception desk, and a view of the city through large windows.

A laundry room with washing machines, a dryer, and two chairs.

4. Isahaya Terminal Hotel

Isahaya

koujirou

HK$525

HK$578 total

25 Sept - 26 Sept

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

A multi-story hotel with a modern design, featuring a flat facade and numerous windows.

A hotel room with two beds, a desk with a computer, a chair, a television, and a window with curtains.

A hotel room with a bed, a desk with a computer, a TV, and a wardrobe.

5. New Station Hotel

Isahaya

Kenji

HK$450

HK$498 total

30 Sept - 1 Oct

A view through a window with a view of a garden with various trees and bushes.

A modern hotel lobby with a mix of seating areas, including sofas and tables, and a view of a garden through large windows.

A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

A chef performing a flambé with fire on a table.

6. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

HK$374

HK$411 total

30 Sept - 1 Oct

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

A modern hotel room with a brown velvet sofa, a small coffee table, a flat-screen TV, and a kitchenette area with wooden cabinets and a microwave.

A modern living room with a red sofa, a glass coffee table, a TV mounted on a wooden panel, and a view of the outdoors through a window with curtains.

7. Morino Villa & Resort

Isahaya

Maximo

HK$559

HK$615 total

25 Sept - 26 Sept

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

A hotel room with a bed, a desk with a computer, a chair, and a window with curtains.

A multi-story hotel with a modern design, featuring a prominent entrance and multiple balconies.

A bento box with rice, macaroni, vegetables, and fried items.

8. New Station Hotel Premiere

Isahaya

HK$442

HK$486 total

29 Sept - 30 Sept

A modern multi-story building with a parking lot in front.

A reception desk at KIKITSU STATION HOTEL with a digital clock, a phone, and a pen holder.

A modern bathroom with multiple sinks, mirrors, and hand dryers.

A balcony with a view of a cityscape, including a body of water and mountains.

9. KIKITSU Station Hotel

Isahaya

Barb

HK$433

HK$476 total

24 Sept - 25 Sept

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

A modern bathroom with a bathtub, a sink, and a toilet.

A hotel room with two beds, each with a pillow and a folded towel. There is an air conditioning unit above the window and wall-mounted lights above the beds.

A buffet setup with various food items, a white tablecloth-covered table, and a modern interior with large windows and ceiling lights.

10. Omura Station Hotel Nagasaki Airport

Omura

Kazuhiko

HK$418

HK$460 total

24 Sept - 25 Sept

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

A hotel room with a bed, a desk with a lamp, a television, and an air conditioning unit.

A meal in a compartmentalized container with rice, macaroni, vegetables, and fried items.

11. Omura Station Hotel

Omura

Yasuhiko

HK$487

HK$540 total

30 Sept - 1 Oct

A clear indoor pool with a water fountain feature, surrounded by dark stone walls and a wooden ceiling.

A view through a window with bamboo plants and a concrete wall.

A view of a coastal cityscape with a prominent building and a parking lot.

A hotel room with two beds, beige walls, a painting of flowers, and a window.

12. Jisco Hotel Obama Onsen

Obama Onsen

Alexander

HK$465

HK$526 total

27 Sept - 28 Sept

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

A hotel room with a bed, a desk, and a chair.

A laundry facility with multiple washing machines and dryers, each with instructional posters on the wall.

A reception area with an orange counter, white walls, and a wooden floor.

13. Comfort Inn Nagasaki Airport

Omura

Asya

HK$362

HK$399 total

4 Oct - 5 Oct

The entrance to Omura Central Hotel with a glass facade, a red carpet, and bicycles parked outside.

A Japanese-style building with a garden.

A multi-story building with balconies, a parking lot, and a view of a cityscape with mountains in the distance.

A hotel room with a bed, bedside lamps, a TV, a desk, and a mini-fridge.

14. Omura Central Hotel

Omura

Jan

HK$652

HK$717 total

27 Sept - 28 Sept

A hotel room with a bed, a desk with a computer, a television, and a microwave.

A row of white front-loading washing machines with baskets on top, lined up against a wall with a wooden floor.

A compact hotel structure with a sign indicating 'Hotel R9 The Yard' and '19 Hotels Group'.

A parking lot with several train carriages and a red sign for 'HOTEL R9 The Yard'.

15. HOTEL R9 The Yard Omura

Omura

Tsz Kin

HK$287

HK$316 total

27 Sept - 28 Sept

A dining table set with breakfast items, a vase of flowers, and a view of a city and mountains.

A hotel room with two beds, a sofa, a nightstand, a lamp, and a view of a cityscape at night.

A traditional Japanese tatami room with a low table, cushions, and sliding doors.

A spacious lobby with a central seating area, a bookshelf, and a dining area in the background.

16. Luke Plaza Hotel

Nagasaki

Kiyonobu

HK$496

HK$545 total

24 Sept - 25 Sept

A hot spring surrounded by rocks and vegetation, with a wooden structure on the left and lanterns along the edge.

A modern building with a flat roof, large windows, and a seating area with chairs and tables.

A modern hotel with a large glass facade, a pool in the foreground, and a well-lit interior with seating areas.

A spacious lobby with large windows offering a view of a serene lake and trees. There are several striped armchairs and a floor lamp.

17. Hoshino Resorts KAI Unzen

Unzen

Gabrielle

HK$2,922

HK$3,229 total

27 Sept - 28 Sept

A hot tub with a view of a cityscape and mountains at dusk.

A hotel lobby with a modern design, featuring a curved ceiling, a chandelier, and a patterned floor.

A traditional building with a tiled roof and arched windows, surrounded by a garden of purple flowers.

A hotel room with two beds, a chandelier, a large wall mural, and a desk with a lamp.

18. Hotel Concerto Nagasaki

Nagasaki

Bryony

HK$553

HK$609 total

27 Sept - 28 Sept

A modern living room with a sofa, a dining table with chairs, and a large window with curtains.

A large brick building with multiple windows and a central courtyard.

A chef in a white uniform pouring sauce onto a dish.

19. Hotel Indigo Nagasaki Glover Street by IHG

Nagasaki

Mitsuru

HK$1,483

HK$1,843 total

24 Sept - 25 Sept

A modern dining area with a long wooden table and chairs, large windows offering a view of greenery, and a kitchen with a herringbone tile backsplash.

A modern reception area with wooden reception desks, a bench, and large windows offering a view of greenery.

A modern living room with a large wooden coffee table, comfortable seating, and pendant lighting.

A modern interior with a wooden bookshelf, comfortable seating, and a hanging light fixture.

20. Fairfield By Marriott Saga Ureshino Onsen

Ureshino

Christopher

HK$583

HK$705 total

24 Sept - 25 Sept

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Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

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Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

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Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

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Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

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Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artefacts in contemplative solitude.

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Sazanka Herb Museum

7.0/10 (2 reviews)

This fragrant highland garden showcases a diverse collection of aromatic herbs in a serene setting. Explore the grounds, join an aroma class, or savour herbal teas at the garden café after your botanical journey.

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Moriyama Folk Museum

8.0/10 (2 reviews)

Learn about the local history of Isahaya when you spend time at Moriyama Folk Museum. Discover the area's mountain views and monuments.

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Ikoinomori Takaki

Escape to Ikoinomori Takaki, a serene park where locals unwind among lush greenery in Isahaya. Bring a picnic to enjoy under the trees during spring when the natural scenery is most captivating.

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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

10/10 Excellent

"Very nice would stay here again."

Dormy Inn Nagasakiekimae Hot Springs

10/10 Excellent

"My BFF and I went to explore Nagasaki Dormy never disappoints This is a premiere and we really enjoyed it…not sure of isffeeence The location was good We saw the one in Chinatown It looked similar? The room was good size for Japan Onsen was clean and excellent The breakfast was delish Love the little touches: like ice cream next to onsen A book library with a nice view and massage chairs before or after onsen! And location was central to everything we wanted to visit Bus stop, train station and trolley stop all in walking distance 7-11 attached to hotel which was convenient Staff was polite and friendly Not a lot of English but accommodating We miss it cuz it was so nice to go back to a comfy hotel at end of day and soak in Onsen!"

Belleview Nagasaki Dejima

10/10 Excellent

"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Nagasaki Marriott Hotel

10/10 Excellent

"Very modern, spacious, and clean, conveniently located next to Nagasaki Station"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

Hotel Rotterdam Huis Ten Bosch

8/10 Good

"Breakfast was limited to 1 main choice and allowed one piece of meat, either mackerel , chicken or sausage. The bread was big so we should be allowed to take more proteins. It should not restricted to 1 piece. Other than that, hotel was in a good location nearby to Huis Ten Bosch."

Hotel Europe Huis Ten Bosch

10/10 Excellent

"とても良い気分で過ごすことができました。"

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Kuromarumachi 347-4 Omura Nagasaki

HK$287

HK$316 total

27 Sept - 28 Sept

8.8/10 Excellent! (39 reviews)

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

HK$319

HK$351 total

25 Sept - 26 Sept

5.4/10 (14 reviews)

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

HK$448

HK$493 total

24 Sept - 25 Sept

8.2/10 Very good! (33 reviews)

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

HK$465

HK$511 total

29 Sept - 30 Sept

8.2/10 Very good! (126 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

HK$465

HK$526 total

27 Sept - 28 Sept

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

HK$628

HK$691 total

24 Sept - 25 Sept

9/10 Wonderful! (2 reviews)

Hotels in Isahaya with star-rating

Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveller data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Tennen Onsen Hotel Kinshai is another good choice for your trip. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best holiday rentals that Isahaya has to offer?

Rakuten STAY HOUSE x WILLSTYLE SASEBO: This holiday home rental outside of Isahaya has air conditioning and laundry facilities to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! Most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

What are some accommodation options with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Provides a children's pool, an indoor pool and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's it like staying in Isahaya?

Visitors can enjoy all that Isahaya has to offer, including the parks and monuments. In Isahaya, there are 19 hotels and other accommodation options to choose from. Find out more about Isahaya.

What is there to see in Isahaya?

Landmarks like Isahaya Park, Kannonji Temple and Kantaku no Sato might be worth a visit. Natural beauty is on display at Todoroki Fall, Tsukinooka Park and Ikoinomori Takaki. A couple of additional sights to add to your itinerary are Konagai Culture Hall and Megane Bridge. Take a look at what more there is to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

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Isahaya hotels from HK$316

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Isahaya hotels

1. Tennen Onsen Hotel Kinshai

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

3. Hotel Route-Inn Isahaya Inter

4. Isahaya Terminal Hotel

5. New Station Hotel

6. Hotel Flags Ishihaya Nagasaki

7. Morino Villa & Resort

8. New Station Hotel Premiere

9. KIKITSU Station Hotel

10. Omura Station Hotel Nagasaki Airport

11. Omura Station Hotel

12. Jisco Hotel Obama Onsen

13. Comfort Inn Nagasaki Airport

14. Omura Central Hotel

15. HOTEL R9 The Yard Omura

16. Luke Plaza Hotel

17. Hoshino Resorts KAI Unzen

18. Hotel Concerto Nagasaki

19. Hotel Indigo Nagasaki Glover Street by IHG

20. Fairfield By Marriott Saga Ureshino Onsen

Stay near popular Isahaya attractions

Isahaya Park

Todoroki Fall

Konagai Culture Hall

Kantaku no Sato

Kannonji Temple

Sazanka Herb Museum

Moriyama Folk Museum

Ikoinomori Takaki

Learn more about Isahaya

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

Dormy Inn Nagasakiekimae Hot Springs

Belleview Nagasaki Dejima

Nagasaki Marriott Hotel

Hotel Nikko Huis Ten Bosch

Hotel Rotterdam Huis Ten Bosch

Hotel Europe Huis Ten Bosch

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Hotel 21

Tennen Onsen Hotel Kinshai

Grand Base Nagasaki City

Jisco Hotel Obama Onsen

HOTEL URO - hostel

Hotels in Isahaya with star-rating

Frequently asked questions

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