Best Port Jefferson Station Hotels in 2026 from HK$679 - Fully Refundable Options

A waterfront at dusk with wooden pilings, a dock, and a small building with lights.

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Our top choices for Port Jefferson Station hotels

1. Americas Best Value Inn Port Jefferson Station Long Island

Port Jefferson Station

Seth

HK$912

HK$1,042 total

includes taxes & fees

27 Sept - 28 Sept

A modern hotel room with a large bed, a wooden headboard, a built-in bathtub, and a flat-screen TV.

A modern hotel lobby with a central coffee bar, seating areas, and a flat-screen TV mounted on the wall.

A large indoor swimming pool with a tiled floor, lounge chairs, and a lifeguard stand.

2. Holiday Inn Express Stony Brook by IHG

Centereach

Wade

HK$927

HK$1,059 total

includes taxes & fees

27 Sept - 28 Sept

A hotel with a parking lot, a large building with multiple floors, and a forested area in the background.

A modern kitchen with granite countertops, a variety of baked goods, and a coffee station.

A patio area with red Adirondack chairs, blue umbrellas, and a brick building in the background.

A modern bar area with a long counter, bar stools, and a variety of bottles and glasses.

3. Hilton Garden Inn Stony Brook

Stony Brook

Kimberly

HK$1,127

HK$1,287 total

includes taxes & fees

6 Oct - 7 Oct

A covered wooden deck with white railings, blue doors, and hanging flower arrangements.

A wooden dock with wicker chairs and a blue umbrella, overlooking a marina with boats and palm trees.

A marina with multiple yachts docked at night.

A marina with boats docked, a pier with blue umbrellas and white chairs, and a flagpole with flags.

4. Danfords Hotel and Marina

Port Jefferson

Martin

HK$1,193

HK$1,666 total

includes taxes & fees

7 Oct - 8 Oct

A large indoor swimming pool with a skylight, lounge chairs, and a seating area with tables.

A hotel room with a bed, a sofa, a desk with a TV, a microwave, and a view of greenery outside.

A hotel reception area with a wooden reception desk, a chandelier, and a welcome sign.

A hotel dining area with wooden tables and chairs, a central bar, and a television screen.

5. Hampton Inn Long Island-Brookhaven

Farmingville

Ucler

HK$958

HK$1,095 total

includes taxes & fees

29 Sept - 30 Sept

A well-organized snack and beverage section with shelves stocked with various products, a refrigerated display, and a small table with snacks.

A banquet hall with round tables set for a formal event, featuring white tablecloths, gold accents, and floral centerpieces.

A modern reception area with a wooden desk, two computer monitors, a sofa, and a decorative shelf with various items.

A modern hotel lobby with a reception desk, directional signs, a dining area with chairs, a sofa, and a large framed artwork on the wall.

6. Holiday Inn Long Island-Islip Arpt East by IHG

Holtsville

Shalonda

HK$926

HK$1,058 total

includes taxes & fees

13 Oct - 14 Oct

An indoor swimming pool with clear blue water, surrounded by lounge chairs and tables.

A modern kitchen with a central island, glass display case, and dark wood cabinets.

A courtyard with outdoor seating, a barbecue grill, and a pool table.

A modern office space with a desk, computer, and chair.

7. Homewood Suites by Hilton Ronkonkoma

Ronkonkoma

Lisa

HK$1,216

HK$1,389 total

includes taxes & fees

27 Sept - 28 Sept

An outdoor patio area with seating, a fire pit, and tables and chairs.

An indoor swimming pool with clear blue water, surrounded by lounge chairs and potted plants.

A modern kitchen area with a self-serve beverage station, a microwave, and various storage cabinets.

A hotel reception area with a modern design, including a reception desk, a digital payment terminal, a minibar, and a self-service beverage station.

8. Home2 Suites by Hilton Long Island Brookhaven

Yaphank

Colleen

HK$1,139

HK$1,301 total

includes taxes & fees

5 Oct - 6 Oct

A swimming pool with a tiled deck, surrounded by windows and chairs.

A modern kitchen with grey cabinets, a black countertop, and a wooden floor.

A multi-story hotel with a prominent American flag, a covered entrance, and a brick facade.

An outdoor patio with a grill, dining table, chairs, and a basketball hoop.

9. Residence Inn by Marriott Long Island Holtsville

Holtsville

Tara

HK$1,060

HK$1,211 total

includes taxes & fees

27 Sept - 28 Sept

A modern kitchen with white brick backsplash, wooden cabinets, and a central island with appliances. There are two dining areas with tables and chairs.

A hotel room with two beds, a desk, a chair, a TV, and a window with curtains.

A spacious hotel lobby with a modern design, featuring a leather sofa, a wooden chair, and a dining area with a large table and chairs.

A modern reception area with a counter, seating, and a refrigerator stocked with beverages.

10. Fairfield Inn by Marriott Medford Long Island

Medford

Carl

HK$946

HK$1,081 total

includes taxes & fees

6 Oct - 7 Oct

A large, multi-story hotel with a prominent tower and a covered entrance.

A hotel room with a bed, a sofa, a small table, a chair, a kitchenette, and a large window with curtains.

A modern hotel lobby with a sectional sofa, dining area, and a bar.

A bar area with a long counter, bar stools, a menu board, and a variety of bottles and glasses.

11. Courtyard by Marriott Long Island MacArthur Airport

Ronkonkoma

MD Ekrim

HK$1,247

HK$1,425 total

includes taxes & fees

30 Sept - 1 Oct

A modern building entrance with a bench, potted plants, and a blue mat leading to a reception area.

A spacious lobby with a reception desk, seating area, and a staircase leading to upper floors.

A modern hotel room with a blue sofa, a wooden desk, a chair, a lamp, and a television.

A hotel room with a large bed, a desk with a chair, a desk lamp, and a bedside table with a phone.

12. Holiday Inn Express Hauppauge-Long Island

Hauppauge

emmanuel

HK$1,051

HK$1,201 total

includes taxes & fees

27 Sept - 28 Sept

A hotel lobby with a reception desk, a blue sofa, a flat-screen TV, and a fireplace.

A hotel entrance with an American flag, a parking lot, and a sign for a nearby Marriott hotel.

A cubicle with a computer, a chair, and a desk.

A large, carpeted conference room with a high ceiling and recessed lighting.

13. Comfort Inn Medford - Long Island

Medford

Jody

HK$877

HK$1,002 total

includes taxes & fees

14 Oct - 15 Oct

A hotel with a prominent sign, a covered entrance, and a car parked in front.

A spacious restaurant with multiple dining tables and chairs, a kitchen area, and a large window.

A hotel reception area with a wooden reception desk, a framed artwork above the counter, and a potted plant on the counter.

A hotel room with two beds, a desk, and a window with curtains.

14. La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

Bohemia

darrell

HK$734

HK$839 total

includes taxes & fees

15 Oct - 16 Oct

An indoor swimming pool with clear glass walls, a tiled floor, and a few chairs near the windows.

A hotel room with a large bed, a desk with a computer, a flat-screen TV, and a window with a view of greenery.

A modern office space with a large flat-screen TV, a desk with a chair, a microwave, and a small plant.

A modern dining area with a coffee station, seating, and a view of the outdoors.

15. Hampton Inn Long Island/Islandia

Islandia

CATHERINE

HK$1,017

HK$1,162 total

includes taxes & fees

7 Oct - 8 Oct

A group of people toasting with wine glasses at a table.

An indoor swimming pool with clear water, surrounded by red and white tiled walls, and equipped with sun loungers and potted plants.

A hotel room with a bed, a sofa, a dining table with chairs, a TV, and a fireplace.

16. Residence Inn By Marriott Long Island Hauppauge

Hauppauge

Debra

HK$1,192

HK$1,390 total

includes taxes & fees

4 Oct - 5 Oct

An indoor swimming pool with sunlit areas, lounge chairs, and potted plants.

A spacious lobby with a modern design, featuring a mix of seating areas, a reception desk, and large windows offering views.

A hallway with a high ceiling, large windows, and a patterned carpet.

A reception area with a dark wood reception desk, two laptops, a vase with white flowers, and a glass table.

17. Hyatt Regency Long Island

Hauppauge

Leonardo

HK$1,127

HK$1,287 total

includes taxes & fees

6 Oct - 7 Oct

A spacious living room with a fireplace, large windows, and a modern chandelier.

A spacious lobby with a central fireplace, a bar area, and a seating area with tables and chairs.

A modern kitchen with a bar area, marble countertops, and dark wooden cabinets.

A store named 'The Shop' with a variety of chilled beverages, snacks, and dairy products.

18. Hilton Garden Inn Islip/MacArthur Airport

Ronkonkoma

Elizabeth

HK$927

HK$1,059 total

includes taxes & fees

12 Oct - 13 Oct

An outdoor patio area with a stone fire pit surrounded by sofas and chairs, string lights overhead, and a view of a multi-story building in the background.

A large indoor swimming pool with clear blue water, surrounded by lounge chairs and tables, with a high ceiling and large windows.

A hotel room with two beds, a large mirror, a TV, and a desk.

19. Residence Inn Long Island Islip/Courthouse Complex

Central Islip

Sareka

HK$1,165

HK$1,331 total

includes taxes & fees

29 Sept - 30 Sept

A building with a sign for "Balino Catering Hall" and a green-lit pillar.

A modern bedroom with a large bed, bedside tables, and a wall-mounted heater.

A modern bathroom with a freestanding bathtub, a small sink, and a shower area.

A motel with a single-story structure, a parking lot with directional arrows, and a small adjacent building.

20. 112 Motel

Medford

Jason

HK$1,236

HK$1,412 total

includes taxes & fees

24 Sept - 25 Sept

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Learn more about Port Jefferson Station

This Long Island community offers easy access to Port Jefferson's charming harbour with its waterfront dining and boutique shopping. Locals recommend visiting Avalon Park and Preserve in nearby Stony Brook for peaceful nature trails and impressive sculpture gardens.

See all hotels in Port Jefferson Station

Top Port Jefferson Station Hotel Reviews

Hampton Inn Long Island-Brookhaven

8/10 Good

"The Hampton Inn Brookhaven is a nice hotel conveniently located right off the 495 expressway at exit 63. The rooms were clean, the beds were comfortable and the hotel was generally clean. The pool area was nice and clean! The staff were very friendly and helpful. The one comment is the hotel parking lot is small so if the hotel is close to capacity it’s hard to find a spot. Other than that we enjoyed our stay and will be here again in the future."

Holiday Inn Express Stony Brook by IHG

10/10 Excellent

"Suite was perfect"

Hyatt Regency Long Island

10/10 Excellent

"A quick little getaway from home. Nice calm environment. Busy but quiet. Friendly and helpful staff. Convenient with all your little needs. Lots of parking. Clean room. Kids loved the indoor pool 😊😊"

La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

8/10 Good

"Room was clean ,beds were comfortable, staff was nice,would stay again."

Holiday Inn Express Hauppauge-Long Island

10/10 Excellent

"I enjoy staying here when I do work with clients in Happaugue NY. I've been a customer for years!"

Radisson Hotel Hauppauge-Long Island

8/10 Good

"Place was nice, we had 2 breakfast meals, very good. We had issue with shower, could not get any cold water, so had to be at lowest heat level. The toilet backed up once. The front desk did have an issue with check-in, and not taking our card for the 100$, but later corrected it and gave us a free meal to make up for it. Thanks! There is an Applebees across the street for dining and drinks, so that was cool. Front desk folks were nice."

Holiday Inn Long Island-Islip Arpt East by IHG

8/10 Good

"Clean room, helpful staff."

Danfords Hotel and Marina

10/10 Excellent

"Rooms are spotless Bar and food amazing along with staff"

Budget Host East End

8/10 Good

"Staff"

More cheap stays in Port Jefferson Station

Budget Host East End

30 Lake Avenue Riverhead NY

HK$698

HK$798 total

27 Sept - 28 Sept

includes taxes & fees

6.8/10 (893 reviews)

Rodeway Inn Macarthur Airport

3055 Veterans Memorial Hwy Ronkonkoma NY

HK$727

HK$830 total

22 Oct - 23 Oct

includes taxes & fees

Quality Suites Stratford

1500 South Ave Stratford CT

HK$825

HK$949 total

18 Oct - 19 Oct

includes taxes & fees

Comfort Inn Medford - Long Island

2695 Route 112 Medford NY

HK$877

HK$1,002 total

14 Oct - 15 Oct

includes taxes & fees

Holiday Inn Express Stony Brook by IHG

3131 Nesconset Hwy Centereach NY

HK$927

HK$1,059 total

27 Sept - 28 Sept

includes taxes & fees

9/10 Wonderful! (1,001 reviews)

Holiday Inn Express Hauppauge-Long Island

2050 Express Dr S Hauppauge NY

HK$1,051

HK$1,201 total

27 Sept - 28 Sept

includes taxes & fees

8.4/10 Very good! (1,588 reviews)

Hotels in Port Jefferson Station with star-rating

Frequently asked questions

What's the best place to stay in Port Jefferson Station?

Located 14.2 mi (22.9 km) from the heart of Port Jefferson Station, Radisson Hotel Hauppauge-Long Island is a top choice for your stay, based on our traveller data. Two other choices for your trip to the area are Holiday Inn Express Hauppauge-Long Island and Clarion Hotel & Conference Center Ronkonkoma MacArthur Airport. See all available top hotels, or vacation rentals in Port Jefferson Station.

What are some of the best holiday rentals that Port Jefferson Station has to offer?

11-Bedroom Mansion with a Seasonal Outdoor Pool open now plus 10.5 bathrooms: This holiday home rental outside of Port Jefferson Station is located on the waterfront, and has an outdoor pool, a fireplace and a BBQ to put you at ease in your new surroundings. It has 11 bedrooms, as well as a kitchen with a dishwasher, a fridge and a stovetop, so that you can cook with friends or family. It offers a balcony, a garden and a selection of games so that you can immerse yourself in your holiday. See all vacation rentals in Port Jefferson Station.

If I need to cancel my hotel reservation in Port Jefferson Station, will I receive a refund?

Yes, most hotel reservations are fully refundable as long as you cancel before the accommodation's cancellation deadline, which is often 24 or 48 hours before your arrival date. If your reservation is non-refundable, you might still have the option to cancel and get a refund within a 24-hour period of your booking. Filter your search by fully refundable to find flexible hotel deals in Port Jefferson Station.

What are some accommodation options with pools in Port Jefferson Station?

Radisson Hotel Hauppauge-Long Island: Features a snack bar/deli, an indoor pool and complimentary high-speed (wired) Internet access. Holiday Inn Express Hauppauge-Long Island and Hampton Inn Long Island-Brookhaven are two additional hotels that offer an on-site pool. View all hotels with pools in Port Jefferson Station.

What is staying in Port Jefferson Station like?

Visitors to Port Jefferson Station will definitely enjoy the port. Tourists can also enjoy the city's shopping, restaurants and university setting. In Port Jefferson Station, there are 5 hotels and other accommodation options to choose from. Find out more about Port Jefferson Station.

What should I do while I'm visiting Port Jefferson Station?

Places to visit in the wider area include Port Jefferson, Avalon Park and Preserve and Smithaven Mall. You'll also find Lake Ronkonkoma and Lasorda Legacy Park in the area. Take a look at what more there is to see and do in Expedia's Port Jefferson Station guide.

How can I get around Port Jefferson Station?

If you want to explore the larger area, take a train from Port Jefferson Station. If you want to venture out around the area, you may want a rental car in Port Jefferson Station for your journey.

What's the seasonal weather like in Port Jefferson Station?

The hottest months are usually July and August, with an average temperature of 22°C, while the coldest months are January and February, with an average of 3°C. Average annual precipitation for Port Jefferson Station is 1404 mm.

Port Jefferson Station hotels from HK$679

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Port Jefferson Station

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Port Jefferson Station hotels

1. Americas Best Value Inn Port Jefferson Station Long Island

2. Holiday Inn Express Stony Brook by IHG

3. Hilton Garden Inn Stony Brook

4. Danfords Hotel and Marina

5. Hampton Inn Long Island-Brookhaven

6. Holiday Inn Long Island-Islip Arpt East by IHG

7. Homewood Suites by Hilton Ronkonkoma

8. Home2 Suites by Hilton Long Island Brookhaven

9. Residence Inn by Marriott Long Island Holtsville

10. Fairfield Inn by Marriott Medford Long Island

11. Courtyard by Marriott Long Island MacArthur Airport

12. Holiday Inn Express Hauppauge-Long Island

13. Comfort Inn Medford - Long Island

14. La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

15. Hampton Inn Long Island/Islandia

16. Residence Inn By Marriott Long Island Hauppauge

17. Hyatt Regency Long Island

18. Hilton Garden Inn Islip/MacArthur Airport

19. Residence Inn Long Island Islip/Courthouse Complex

20. 112 Motel

Learn more about Port Jefferson Station

Top Port Jefferson Station Hotel Reviews

Hampton Inn Long Island-Brookhaven

Holiday Inn Express Stony Brook by IHG

Hyatt Regency Long Island

La Quinta Inn & Suites by Wyndham Islip - MacArthur Airport

Holiday Inn Express Hauppauge-Long Island

Radisson Hotel Hauppauge-Long Island

Holiday Inn Long Island-Islip Arpt East by IHG

Danfords Hotel and Marina

Budget Host East End

More cheap stays in Port Jefferson Station

Budget Host East End

Rodeway Inn Macarthur Airport

Quality Suites Stratford

Comfort Inn Medford - Long Island

Holiday Inn Express Stony Brook by IHG

Holiday Inn Express Hauppauge-Long Island

Hotels in Port Jefferson Station with star-rating

Frequently asked questions

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