San Diego Shelter Island Hotels: 2026 Limited-Time Hotel Deals @Expedia

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

A beach with sand dunes and a person walking.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

HK$1,601

HK$1,840 total

includes taxes & fees

20 Sept - 21 Sept

A balcony with a table set for two, overlooking a marina with numerous boats.

A pool area with lounge chairs and umbrellas, overlooking a marina with numerous boats.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

2. Bay Club Hotel & Marina

0.7 km from Shelter Island

Jennifer

HK$1,263

HK$1,452 total

includes taxes & fees

7 Sept - 8 Sept

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A modern lobby with a reception desk, seating area, and a large screen.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

3. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Marianne

HK$1,528

HK$1,757 total

includes taxes & fees

4 Oct - 5 Oct

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

4. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

David

HK$1,414

HK$1,626 total

includes taxes & fees

5 Oct - 6 Oct

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Simon

HK$1,160

HK$1,333 total

includes taxes & fees

30 Sept - 1 Oct

A resort with two-story buildings, balconies, and a pool area.

A resort with a pool, palm trees, and a building with multiple balconies.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

A canal lined with palm trees and a row of buildings with balconies.

6. Humphreys Half Moon Inn

1 km from Shelter Island

Laura

HK$1,325

HK$1,680 total

includes taxes & fees

7 Sept - 8 Sept

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A marina with boats docked, a balcony with chairs, and a view of the marina.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A coastal view with a clear sky, a marina with boats, and a building with a balcony.

7. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

HK$1,279

HK$1,471 total

includes taxes & fees

20 Sept - 21 Sept

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

A modern aquarium with a celestial-themed backdrop.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Colleen

HK$1,451

HK$1,668 total

includes taxes & fees

4 Oct - 5 Oct

A building with a sign reading "the Pearl" and a modern architectural style.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

A modern interior with a stone wall, leather sofa, and pendant lighting.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

9. The Pearl Hotel

1.6 km from Shelter Island

Christine

HK$1,254

HK$1,416 total

includes taxes & fees

28 Sept - 29 Sept

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

10. Sea Harbor Hotel

1.4 km from Shelter Island

Taylor

HK$831

HK$937 total

includes taxes & fees

7 Sept - 8 Sept

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

A gym with a treadmill, elliptical, and weight machines.

11. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Donald

HK$792

HK$909 total

includes taxes & fees

7 Sept - 8 Sept

A square pizza on a wooden board with a fire pit in the background.

A hotel with a well-maintained lawn, palm trees, and a pool area.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

12. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Jennifer

HK$1,215

HK$1,397 total

includes taxes & fees

27 Sept - 28 Sept

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern hotel with a curved facade, multiple balconies, and large windows.

A bar area with a long wooden table, multiple bar stools, and a variety of liquor bottles and glasses.

A hotel room with two beds, a view of the city, a dining area, and a large window.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Alexa

HK$1,115

HK$1,282 total

includes taxes & fees

13 Sept - 14 Sept

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A multi-level interior with a staircase, black railings, and hanging lights.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

George

HK$700

HK$789 total

includes taxes & fees

7 Sept - 8 Sept

A marina with boats, a yacht, and a balcony with two chairs and a table.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

15. Kona Kai San Diego

0.2 km from Shelter Island

Edward

HK$1,562

HK$2,266 total

includes taxes & fees

7 Sept - 8 Sept

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

16. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Fredric

HK$846

HK$955 total

includes taxes & fees

29 Sept - 30 Sept

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Jeremy

HK$746

HK$857 total

includes taxes & fees

8 Sept - 9 Sept

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

A reception area with a wooden reception desk, a computer, and a chair.

18. Hotel Point Loma

1.5 km from Shelter Island

Shelby

HK$731

HK$824 total

includes taxes & fees

14 Sept - 15 Sept

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

19. Hotel Aqua Mar

1.7 km from Shelter Island

tia

HK$664

HK$748 total

includes taxes & fees

7 Oct - 8 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

linda

HK$486

HK$549 total

includes taxes & fees

13 Sept - 14 Sept

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,686 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 3,906 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,271 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,712 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,621 reviews	View

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

10/10 Excellent

"Very good stay we will be back"

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent

"Love this property, clean and comfy with amazing staff. Johnny is the super friendly and funny. Most definitely will be back."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"Fabulous"

Hilton San Diego Airport/Harbor Island

10/10 Excellent

"It was relaxing. The bar and grill was great."

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"Excellent service Super Clean"

Hotel Point Loma

10/10 Excellent

"Great staff."

The Pearl Hotel

10/10 Excellent

"Stayed here for my birthday everyone was amazing! It was so nice, and not too loud!beautiful details, I felt at home. I’m a local and I just love Point Loma it’s such a great little part of town, she this is located in the heart of most of the best things! I will for sure come back for more staycations."

Boho Flat 1 block from exclusive beach!

10/10 Excellent

"Great location with access to beach , sites and other activities nestled on a quite street."

Other attractions near Shelter Island

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

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Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 39 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 39 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

San Diego Shelter Island Hotels

Change your mind

Treat yourself

Be picky

Check prices for these dates

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Star rating

Guest rating

Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Bay Club Hotel & Marina

3. Courtyard by Marriott San Diego Airport/Liberty Station

4. Hampton Inn & Suites San Diego Airport Liberty Station

5. Best Western Plus Island Palms Hotel & Marina

6. Humphreys Half Moon Inn

7. Hilton San Diego Airport/Harbor Island

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. The Pearl Hotel

10. Sea Harbor Hotel

11. Best Western Yacht Harbor Hotel

12. DoubleTree by Hilton San Diego Bayside

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

15. Kona Kai San Diego

16. Comfort Inn San Diego Airport At The Harbor

17. Ramada by Wyndham San Diego Airport

18. Hotel Point Loma

19. Hotel Aqua Mar

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

The Monsaraz San Diego, Tapestry Collection by Hilton

Best Western Plus Island Palms Hotel & Marina

Hilton San Diego Airport/Harbor Island

Comfort Inn San Diego Airport At The Harbor

Hotel Point Loma

The Pearl Hotel

Boho Flat 1 block from exclusive beach!

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

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