Best Henderson Harbor Hotels in 2026 from HK$522 - Fully Refundable Options

A large body of water surrounded by dense forests and a winding road.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Henderson Harbor

Pet friendly

Apartment

Pool

Family friendly

Cottage

Condo

Waterpark

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Our top choices for Henderson Harbor hotels

Hotel

Breakfast included

Pet friendly

Reserve now, pay later

Bed & breakfast

A building with a balcony overlooking a body of water, surrounded by greenery.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

A spacious living area with a wooden floor, a sofa, a dining table, and a bar area with a counter and shelves.

1. The GillHouse

Henderson Harbor

Tracey

HK$1,164

HK$1,292 total

includes taxes & fees

24 Sept - 25 Sept

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A kitchen with a coffee maker, a fruit bowl, and a bread display.

A building with a flat roof and a parking lot in front.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

2. Harbor House Inn

Sackets Harbor

CLIVE

HK$1,651

HK$1,924 total

includes taxes & fees

30 Aug - 31 Aug

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A reception desk with a "Welcome to Watertown" sign, framed pictures, and a "Hilton Honors" sign.

An indoor swimming pool with clear lane markings, a no diving sign, and a lifeguard chair.

A gym with treadmills, elliptical machines, and free weights.

3. Hampton Inn Watertown

Watertown

Bukola

HK$957

HK$1,063 total

includes taxes & fees

13 Sept - 14 Sept

A Holiday Inn Express & Suites with a covered entrance, landscaped gardens, and a well-lit facade.

A buffet with labeled trays of omelets and other dishes.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

A hotel lobby with a reception desk, a wooden reception desk, a glass door entrance, and a ceiling light fixture.

4. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

john

HK$1,027

HK$1,140 total

includes taxes & fees

20 Sept - 21 Sept

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A swimming pool with a changing room, sun loungers, and a hot tub area.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A reception area with two reception desks, a wall with a tree branch pattern, and a seating area with tables and chairs.

5. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Charles

HK$1,086

HK$1,205 total

includes taxes & fees

9 Sept - 10 Sept

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A lobby with a reception desk, seating area, and a large potted plant.

A cozy room with a stone fireplace, two floral armchairs, a small wooden table, and a large window offering a view of the outside.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

6. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Roger

HK$586

HK$651 total

includes taxes & fees

18 Sept - 19 Sept

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

A hotel pool area with multiple hot tubs, a reception desk, and seating areas.

A spacious lobby with high ceilings, large windows, and modern furniture.

7. Hilton Garden Inn Watertown/Thousand Islands

Watertown

daniel

HK$1,077

HK$1,195 total

includes taxes & fees

13 Sept - 14 Sept

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A hotel kitchen with wooden cabinets, granite countertops, and a coffee station with various coffee makers and containers.

8. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Andre

HK$896

HK$995 total

includes taxes & fees

15 Sept - 16 Sept

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

A gym with various exercise machines, a television, and a green wall.

9. Spark by Hilton Watertown

Watertown

Kris

HK$893

HK$991 total

includes taxes & fees

16 Sept - 17 Sept

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A pair of white front-loading washers in a laundry room with a tiled floor.

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

10. Days Inn by Wyndham Watertown Fort Drum

Calcium

William

HK$706

HK$783 total

includes taxes & fees

31 Aug - 1 Sept

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A hotel room with two beds, red walls, and a nightstand with a lamp.

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

A building with a sign reading "Adirondack Efficiencies."

11. Adirondack Efficiencies Watertown

Watertown

Kimberley M

HK$577

HK$640 total

includes taxes & fees

25 Sept - 26 Sept

A hotel room with a large bathtub, a black leather sofa, a bed, a desk with a computer, and a television.

A picnic table with a wooden bench, a metal pole, and a trash bin.

A building with a covered entrance, stone pillars, and a clear sky.

A vending machine with various snacks and drinks.

12. Travel Inn

Watertown

Trina

HK$487

HK$540 total

includes taxes & fees

3 Sept - 4 Sept

A room with a bed, a chair, a table, and a lamp.

A bathroom with a bathtub, a shower, and a toilet.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

A hotel room with a bed, a desk, a chair, and a small table.

13. Allen's Budget Motel

Watertown

Doug

HK$470

HK$522 total

includes taxes & fees

27 Aug - 28 Aug

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A Nest Inn sign, a parking area, and a building with a red exterior.

A reception desk with a 'Welcome Centre' sign, a window with blinds, and a tiled floor.

A bathroom with a white sink, a modern faucet, and a blue soap dispenser.

14. Nest Inn

Watertown

Debbie

HK$490

HK$587 total

includes taxes & fees

27 Aug - 28 Aug

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A building with a sign reading "ROYAL INN" and a car parked in front.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A staircase with wooden handrails leading to an upper floor.

15. Royal Inn Motel

Watertown

Susan

HK$549

HK$609 total

includes taxes & fees

27 Aug - 28 Aug

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A reception area with a marble counter, pendant lighting, and a tiled floor.

A modern kitchen area with a coffee machine, a fresh juice dispenser, and a breakfast bar.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

16. Quality Inn & Suites Watertown Fort Drum

Calcium

Nicole

HK$616

HK$683 total

includes taxes & fees

15 Sept - 16 Sept

A hotel room with two beds, a desk with a coffee maker, a microwave, and a TV.

A gym with treadmills, a weight machine, and a red exercise ball.

A modern living room with a flat-screen TV, a wooden coffee table, a sofa, a bookshelf, and a patterned rug.

A hotel with a prominent "CANDLEWOOD SUITES" sign, a parking lot, and a building with a mix of red and blue facades.

17. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Vanessa

HK$815

HK$905 total

includes taxes & fees

9 Sept - 10 Sept

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Henderson Harbor attractions

Saiff Charters

Lake Ontario comes alive with Saiff Charters' expert-guided salmon and trout fishing excursions. Experienced captains ensure a productive day on fully equipped boats while you enjoy lodging and meals.

See properties

Learn more about Henderson Harbor

Venture to sights like Lake Ontario and Saiff Charters as you discover Henderson Harbor.

See all hotels in Henderson Harbor

Top Henderson Harbor Hotel Reviews

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"Excellent place to stay. Pool and hot tub were great. Staff were wonderful and helpful. Will stay here again!"

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

8/10 Good

"Bien situé"

Hampton Inn Watertown

10/10 Excellent

"Very clean hotel, staff was nice and helpful! Very clean room as well."

Fairfield Inn & Suites Watertown Thousand Islands

10/10 Excellent

"Enjoyed the stay, room was great."

Quality Inn & Suites Watertown Fort Drum

10/10 Excellent

"Booked short notice and was very happy with the property"

Ramada by Wyndham Watertown/Thousand Islands NY

10/10 Excellent

"The best place and abondamment gaz station and restaurants."

Adirondack Efficiencies Watertown

8/10 Good

"Very clean room keep it up"

Martin’s Guesthouse

10/10 Excellent

"Great stay! The place was clean, comfortable, and in a great location. We really enjoyed our stay and would definitely recommend it!"

Beautiful Lake House w/ Private Beach

10/10 Excellent

"Stayed for a week with my wife, adult sons and their wives/gf’s and dogs. House is beautiful and great access to the water. Very relaxing to sit by the campfire at night. Host was very accommodating and easy to contact. Listing is as described. The water is the only real negative, pretty significant sulfer smell. You can’t drink the water and it was tough to even shower. That said Helena is up front about this and left us plenty of water to drink and do the dishes. No issues with neighbors or kids running in the yard as others described in thier reviews, it was very peaceful setting, in fact on 2 mornings we had deer in the yard. The road is very quiet to walk your pets. The deck is huge and a great place to have your meals. Didn’t feel not having AC impacted our stay at all as there were plenty of fans and the breeze cooled the house down at night, I defintely would stay again!"

More cheap stays in Henderson Harbor

Travel Inn

1190 Arsenal St Watertown NY

HK$487

HK$540 total

3 Sept - 4 Sept

includes taxes & fees

6.8/10 (63 reviews)

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

HK$586

HK$651 total

18 Sept - 19 Sept

includes taxes & fees

8/10 Very good! (1,107 reviews)

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

HK$616

HK$683 total

15 Sept - 16 Sept

includes taxes & fees

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

HK$706

HK$783 total

31 Aug - 1 Sept

includes taxes & fees

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

HK$896

HK$995 total

15 Sept - 16 Sept

includes taxes & fees

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY

HK$1,027

HK$1,140 total

20 Sept - 21 Sept

includes taxes & fees

9.2/10 Wonderful! (1,012 reviews)

Frequently asked questions

Where is the best place for a stay in Henderson Harbor?

Based on our traveller data, The GillHouse is one of the top choices for your stay. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and free parking. Other good options for your stay in the area are Ramada by Wyndham Watertown/Thousand Islands NY and Spark by Hilton Watertown. See all available top hotels, or vacation rentals in Henderson Harbor.

What are some of the best holiday rentals that Henderson Harbor has to offer?

River's Getaway- an urban oasis!: This holiday home rental outside of Henderson Harbor offers a fireplace, a balcony and a BBQ to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a dishwasher, a fridge and a stovetop. You and your friends and family can relax into your holiday with amenities such as a garden. See all vacation rentals in Henderson Harbor.

If I need to cancel my hotel reservation in Henderson Harbor, will I receive a refund?

Yes! Most hotel bookings are refundable provided that you cancel before the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you have a non-refundable reservation, you might be able to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Henderson Harbor.

What's the best dog-friendly accommodation option in Henderson Harbor?

The GillHouse is a top dog-friendly hotel, and offers a restaurant and a bar/lounge for its human guests. See more pet-friendly hotel accommodations in Henderson Harbor.

What are some accommodation options with pools in Henderson Harbor?

Ramada by Wyndham Watertown/Thousand Islands NY: Features daily, a seasonal outdoor pool and free self parking. Comfort Inn & Suites Watertown - 1000 Islands and Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG are a couple of other choices that offer an on-site pool. View all hotels with pools in Henderson Harbor.

How is it to stay in Henderson Harbor?

Those travelling to Henderson Harbor will definitely enjoy the sights to see and things to do. In Henderson Harbor, there are 5 hotels and other accommodation options to choose from. Find out more about Henderson Harbor.

What should I see while I'm in Henderson Harbor?

A couple of favourite places to visit are Lake Ontario and Saiff Charters. You'll also find Westcott Beach State Park and Southwick Beach State Park in the area. Take a look at what more there is to see and do in Expedia's Henderson Harbor guide.

What's the seasonal weather in Henderson Harbor?

The hottest months are usually July and August, with an average temperature of 19°C, while the coldest months are January and February, with an average of -3°C. The snowiest months in Henderson Harbor are January, February, March and November, with each month seeing an average of 47 cm of snowfall.

Henderson Harbor hotels from HK$522

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Henderson Harbor

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Henderson Harbor hotels

1. The GillHouse

2. Harbor House Inn

3. Hampton Inn Watertown

4. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

5. Fairfield Inn & Suites Watertown Thousand Islands

6. Ramada by Wyndham Watertown/Thousand Islands NY

7. Hilton Garden Inn Watertown/Thousand Islands

8. Comfort Inn & Suites Watertown - 1000 Islands

9. Spark by Hilton Watertown

10. Days Inn by Wyndham Watertown Fort Drum

11. Adirondack Efficiencies Watertown

12. Travel Inn

13. Allen's Budget Motel

14. Nest Inn

15. Royal Inn Motel

16. Quality Inn & Suites Watertown Fort Drum

17. Candlewood Suites Watertown Fort Drum by IHG

Stay near popular Henderson Harbor attractions

Saiff Charters

Learn more about Henderson Harbor

Top Henderson Harbor Hotel Reviews

Hilton Garden Inn Watertown/Thousand Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Hampton Inn Watertown

Fairfield Inn & Suites Watertown Thousand Islands

Quality Inn & Suites Watertown Fort Drum

Ramada by Wyndham Watertown/Thousand Islands NY

Adirondack Efficiencies Watertown

Martin’s Guesthouse

Beautiful Lake House w/ Private Beach

More cheap stays in Henderson Harbor

Travel Inn

Ramada by Wyndham Watertown/Thousand Islands NY

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Comfort Inn & Suites Watertown - 1000 Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app