Best Isahaya Hotels in 2026 from HK$317 - Fully Refundable Options

An aerial view of a rural landscape with fields, a small town, and distant mountains.

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Our top choices for Isahaya hotels

A multi-story building with a flat facade, balconies, and a parking lot in front.

A spacious room with a ping pong table, two hanging chairs, and patterned carpet.

A hotel room with two beds, a desk with a computer, a sink, and an air conditioning unit.

A room with two ping pong tables, a red chair, and exercise bikes.

1. Tennen Onsen Hotel Kinshai

Isahaya

HIROKI

HK$449

HK$494 total

23 Sept - 24 Sept

A hotel room with a bed, a desk, a chair, a window with a city view, and a wall-mounted TV.

A reception desk with a computer, a plant, and a cash register.

A laundry facility with four washing machines and four dryers, each labeled with a number.

A store with shelves of folded clothing and a map on the wall.

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

HK$511

HK$562 total

27 Sept - 28 Sept

A modern building entrance with a set of stairs leading to a glass door entrance.

A laundry room with washing machines, a dryer, and two chairs.

A reception area with a wooden reception desk, a seating area with a sofa, and a bookshelf.

A hotel room with a sofa, two beds, a TV, and a window with curtains.

3. Isahaya Terminal Hotel

Isahaya

koujirou

HK$544

HK$598 total

25 Sept - 26 Sept

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

A multi-story hotel with a modern design, featuring a prominent entrance and multiple balconies.

A hotel room with a bed, a desk with a computer, a chair, and a window with curtains.

A bento box with rice, macaroni, vegetables, and fried items.

4. New Station Hotel Premiere

Isahaya

James

HK$444

HK$489 total

15 Oct - 16 Oct

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

A multi-story hotel with a modern design, featuring a flat facade and numerous windows.

A hotel room with two beds, a desk with a computer, a chair, a television, and a window with curtains.

A hotel room with a bed, a desk with a computer, a TV, and a wardrobe.

5. New Station Hotel

Isahaya

Kenji

HK$457

HK$502 total

25 Sept - 26 Sept

A hotel lobby with a reception desk, seating area, and large windows.

A laundry facility with multiple coin-operated washers and dryers, a step for access, and a potted plant.

A buffet line with various food items and condiments.

6. Hotel Route-Inn Isahaya Inter

Isahaya

?????

HK$662

HK$733 total

6 Oct - 7 Oct

A view through a window with a view of a garden with various trees and bushes.

A modern lobby with seating areas, a bar, and a bookshelf.

A traditional Japanese-style hotel room with tatami flooring, two beds, a television, and a view of greenery through large windows.

A chef performing a flambé with fire on a table.

7. Hotel Flags Ishihaya Nagasaki

Isahaya

cat

HK$486

HK$534 total

23 Sept - 24 Sept

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

A modern hotel room with a brown velvet sofa, a small coffee table, a flat-screen TV, and a kitchenette area with wooden cabinets and a microwave.

A modern living room with a red sofa, a glass coffee table, a TV mounted on a wooden panel, and a view of the outdoors through a window with curtains.

8. Morino Villa & Resort

Isahaya

Maximo

HK$559

HK$615 total

25 Sept - 26 Sept

A modern multi-story building with a parking lot in front.

A modern bathroom with multiple sinks, mirrors, and hand dryers.

A hotel room with a bed, a desk with a chair, a television, and a mirror.

A balcony with a view of a cityscape, including a body of water and mountains.

9. KIKITSU Station Hotel

Isahaya

Barb

HK$434

HK$477 total

24 Sept - 25 Sept

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

A modern bathroom with a bathtub, a sink, and a toilet.

A buffet setup with various food items, a white tablecloth-covered table, and a modern interior with large windows and ceiling lights.

A modern multi-story building with balconies, large windows, and a flat roof.

10. Omura Station Hotel Nagasaki Airport

Omura

Kazuhiko

HK$418

HK$460 total

24 Sept - 25 Sept

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

A modern dining area with multiple tables and chairs, recessed ceiling lighting, and large windows.

A meal in a compartmentalized container with rice, macaroni, vegetables, and fried items.

A hotel room with a bed, a desk with a lamp, a television, and an air conditioning unit.

11. Omura Station Hotel

Omura

Yasuhiko

HK$488

HK$540 total

6 Oct - 7 Oct

The entrance to Omura Central Hotel with a glass facade, a red carpet, and bicycles parked outside.

A hotel room with a bed, bedside lamps, a TV, a desk, and a mini-fridge.

A multi-story building with balconies, a parking lot, and a view of a cityscape with mountains in the distance.

A spacious lobby with a polished tile floor, a reception desk, and seating areas.

12. Omura Central Hotel

Omura

Jan

HK$653

HK$718 total

27 Sept - 28 Sept

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

A reception area with an orange counter, white walls, and a wooden floor.

A laundry facility with multiple washing machines and dryers, each with instructional posters on the wall.

A modern, well-lit dining area with long tables and chairs, a kitchen in the background, and large windows offering a view of greenery outside.

13. Comfort Inn Nagasaki Airport

Omura

Asya

HK$350

HK$385 total

23 Sept - 24 Sept

A clear indoor pool with a water fountain feature, surrounded by dark stone walls and a wooden ceiling.

A multi-story hotel with illuminated windows and balconies, featuring a sign in a foreign language.

A view through a window with bamboo plants and a concrete wall.

A view of a coastal cityscape with a prominent building and a parking lot.

14. Jisco Hotel Obama Onsen

Obama Onsen

Alexander

HK$465

HK$527 total

30 Sept - 1 Oct

A hotel room with a bed, a desk with a computer, a television, and a microwave.

A parking lot with several train carriages and a red sign for 'HOTEL R9 The Yard'.

A reception area with a wooden counter, two wall-mounted speakers, and a small table.

A compact hotel structure with a sign indicating 'Hotel R9 The Yard' and '19 Hotels Group'.

15. HOTEL R9 The Yard Omura

Omura

Tsz Kin

HK$288

HK$317 total

27 Sept - 28 Sept

A hot tub with a view of a cityscape and mountains at dusk.

A traditional building with a tiled roof and arched windows, surrounded by a garden of purple flowers.

A hotel room with two beds, a chandelier, a large wall mural, and a desk with a lamp.

A hotel room with a large bed, a sofa, a dining table with chairs, and a reception desk.

16. Hotel Concerto Nagasaki

Nagasaki

Bryony

HK$523

HK$576 total

23 Sept - 24 Sept

A modern bathroom with a freestanding bathtub, a view of a cityscape, and a wooden interior.

A traditional Japanese-style building with a tiled roof, surrounded by lush greenery and a stone pathway leading to the entrance.

A swimming pool with a city view at night.

A modern restaurant with a view of a cityscape at night.

17. Inasayama Kanko Hotel

Nagasaki

Yuka

HK$526

HK$579 total

23 Sept - 24 Sept

A dining table set with breakfast items, a vase of flowers, and a view of a city and mountains.

A traditional Japanese tatami room with a low table, cushions, and sliding doors.

A spacious lobby with a central seating area, a bookshelf, and a dining area in the background.

A hotel room with two beds, a sofa, a nightstand, a lamp, and a view of a cityscape at night.

18. Luke Plaza Hotel

Nagasaki

Kiyonobu

HK$495

HK$545 total

23 Sept - 24 Sept

A modern dining area with a long wooden table and chairs, large windows offering a view of greenery, and a kitchen with a herringbone tile backsplash.

A modern interior with a wooden bookshelf, comfortable seating, and a hanging light fixture.

A modern reception area with wooden reception desks, a bench, and large windows offering a view of greenery.

A modern hotel room with a large bed, a bedside table, a mirror, and a small desk area.

19. Fairfield By Marriott Saga Ureshino Onsen

Ureshino

Christopher

HK$584

HK$706 total

23 Sept - 24 Sept

A modern living room with a sofa, a dining table with chairs, and a large window with curtains.

A large brick building with multiple windows and a central courtyard.

A paved outdoor area with white tables and umbrellas, a brick building with arched windows, and a river with a bridge in the background.

20. Hotel Indigo Nagasaki Glover Street by IHG

Nagasaki

Mitsuru

HK$1,485

HK$1,845 total

28 Sept - 29 Sept

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Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

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Kantaku no Sato

7.4/10 (3 reviews)

This educational complex showcases Isahaya Bay's reclamation history and marine life through its Kantaku Museum and Mutsugoro Aquarium. Enjoy horseback riding, boating, or a 100-meter zipline in the adventure park.

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Todoroki Fall

6.0/10 (1 review)

This 12-meter waterfall creates a thunderous roar as it cascades into crystal-clear pools below. Explore the surrounding valley's lush trails, where 30 smaller falls create a tranquil forest symphony.

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Kannonji Temple

6.0/10 (1 review)

Kannonji Temple offers a serene retreat with traditional Buddhist architecture in Isahaya City, Nagasaki. Visit in early morning to experience the peaceful grounds and cultural artefacts in contemplative solitude.

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Sazanka Herb Museum

7.0/10 (2 reviews)

This fragrant highland garden showcases a diverse collection of aromatic herbs in a serene setting. Explore the grounds, join an aroma class, or savour herbal teas at the garden café after your botanical journey.

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Konagai Culture Hall

6.0/10 (2 reviews)

This community hub hosts local events and offers a welcoming library for quiet study. Look for the whimsical fruit-shaped bus stops nearby—they make for delightful photo opportunities.

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Moriyama Folk Museum

8.0/10 (2 reviews)

Learn about the local history of Isahaya when you spend time at Moriyama Folk Museum. Discover the area's mountain views and monuments.

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Ikoinomori Takaki

Escape to Ikoinomori Takaki, a serene park where locals unwind among lush greenery in Isahaya. Bring a picnic to enjoy under the trees during spring when the natural scenery is most captivating.

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Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

10/10 Excellent

"Very nice would stay here again."

Dormy Inn Nagasakiekimae Hot Springs

10/10 Excellent

"My BFF and I went to explore Nagasaki Dormy never disappoints This is a premiere and we really enjoyed it…not sure of isffeeence The location was good We saw the one in Chinatown It looked similar? The room was good size for Japan Onsen was clean and excellent The breakfast was delish Love the little touches: like ice cream next to onsen A book library with a nice view and massage chairs before or after onsen! And location was central to everything we wanted to visit Bus stop, train station and trolley stop all in walking distance 7-11 attached to hotel which was convenient Staff was polite and friendly Not a lot of English but accommodating We miss it cuz it was so nice to go back to a comfy hotel at end of day and soak in Onsen!"

Belleview Nagasaki Dejima

10/10 Excellent

"A very friendly and wel ome staff and front desk with management care and hospitality. Lool.forward to future booking in a tranquility and peaceful hotel"

Nagasaki Marriott Hotel

10/10 Excellent

"Very modern, spacious, and clean, conveniently located next to Nagasaki Station"

FAV LUX NAGASAKI

10/10 Excellent

"This hotel is clean,modern and very comfortable. It made my visit to Nagasaki even better. Its close to a tram stop to access all main attractions and about 200M to Glover garden. Highly recommended"

Hotel Nikko Huis Ten Bosch

8/10 Good

"Staff services"

Hotel Rotterdam Huis Ten Bosch

8/10 Good

"Breakfast was limited to 1 main choice and allowed one piece of meat, either mackerel , chicken or sausage. The bread was big so we should be allowed to take more proteins. It should not restricted to 1 piece. Other than that, hotel was in a good location nearby to Huis Ten Bosch."

Hotel Europe Huis Ten Bosch

10/10 Excellent

"とても良い気分で過ごすことができました。"

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Kuromarumachi 347-4 Omura Nagasaki

HK$288

HK$317 total

27 Sept - 28 Sept

8.8/10 Excellent! (39 reviews)

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

HK$319

HK$351 total

25 Sept - 26 Sept

5.4/10 (14 reviews)

Tennen Onsen Hotel Kinshai

22-12 Saiwaimachi Isahaya Nagasaki

HK$449

HK$494 total

23 Sept - 24 Sept

8.2/10 Very good! (33 reviews)

Grand Base Nagasaki City

2 39 Tamazonomachi Nagasaki Nagasaki Prefecture

HK$465

HK$512 total

29 Sept - 30 Sept

8.2/10 Very good! (126 reviews)

Jisco Hotel Obama Onsen

Obamacho Minamihonmachi - 145-2 Unzen Nagasaki

HK$465

HK$527 total

30 Sept - 1 Oct

HOTEL URO - hostel

6-10 Kajiya-machi Nagasaki Nagasaki

HK$630

HK$693 total

24 Sept - 25 Sept

9/10 Wonderful! (2 reviews)

Hotels in Isahaya with star-rating

Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveller data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Tennen Onsen Hotel Kinshai is another good choice for your trip. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best holiday rentals that Isahaya has to offer?

Seaside Villa N: This holiday home rental outside of Isahaya is equipped with a balcony, air conditioning and free WiFi to help you feel comfortable during your stay. Kitchen amenities include a fridge, a stovetop and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! Most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

What are some accommodation options with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Provides a children's pool, an indoor pool and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's it like staying in Isahaya?

Visitors can enjoy all that Isahaya has to offer, including the parks and monuments. In Isahaya, there are 19 hotels and other accommodation options to choose from. Find out more about Isahaya.

What is there to see in Isahaya?

Landmarks like Isahaya Park, Kantaku no Sato and Megane Bridge might be worth a visit. Natural beauty is on display at Todoroki Fall, Tsukinooka Park and Ikoinomori Takaki. A couple of additional sights to add to your itinerary are Konagai Culture Hall and Moriyama Sports Community Square. Take a look at what more there is to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

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Isahaya hotels from HK$317

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Isahaya hotels

1. Tennen Onsen Hotel Kinshai

2. Super Hotel Nagasaki Isahaya Natural Hot Spring

3. Isahaya Terminal Hotel

4. New Station Hotel Premiere

5. New Station Hotel

6. Hotel Route-Inn Isahaya Inter

7. Hotel Flags Ishihaya Nagasaki

8. Morino Villa & Resort

9. KIKITSU Station Hotel

10. Omura Station Hotel Nagasaki Airport

11. Omura Station Hotel

12. Omura Central Hotel

13. Comfort Inn Nagasaki Airport

14. Jisco Hotel Obama Onsen

15. HOTEL R9 The Yard Omura

16. Hotel Concerto Nagasaki

17. Inasayama Kanko Hotel

18. Luke Plaza Hotel

19. Fairfield By Marriott Saga Ureshino Onsen

20. Hotel Indigo Nagasaki Glover Street by IHG

Stay near popular Isahaya attractions

Isahaya Park

Kantaku no Sato

Todoroki Fall

Kannonji Temple

Sazanka Herb Museum

Konagai Culture Hall

Moriyama Folk Museum

Ikoinomori Takaki

Learn more about Isahaya

Top Isahaya Hotel Reviews

THE GLOBAL VIEW Nagasaki

Dormy Inn Nagasakiekimae Hot Springs

Belleview Nagasaki Dejima

Nagasaki Marriott Hotel

FAV LUX NAGASAKI

Hotel Nikko Huis Ten Bosch

Hotel Rotterdam Huis Ten Bosch

Hotel Europe Huis Ten Bosch

More cheap stays in Isahaya

HOTEL R9 The Yard Omura

Hotel 21

Tennen Onsen Hotel Kinshai

Grand Base Nagasaki City

Jisco Hotel Obama Onsen

HOTEL URO - hostel

Hotels in Isahaya with star-rating

Frequently asked questions

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