
San Diego Shelter Island Hotels
- Change your mindBook hotels with free cancellation
- Be pickySearch almost a million properties worldwide
Check prices for these dates
Our top choices for Shelter Island hotels

Bay Club Hotel & Marina
Bay Club Hotel & Marina0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,627 reviews)
The price is HK$1,390
HK$1,597 total
includes taxes & fees
29 Jun - 30 Jun

Best Western Plus Island Palms Hotel & Marina
Best Western Plus Island Palms Hotel & Marina0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,606 reviews)
The price is HK$1,373
HK$1,578 total
includes taxes & fees
14 Jun - 15 Jun

Courtyard by Marriott San Diego Airport/Liberty Station
Courtyard by Marriott San Diego Airport/Liberty Station2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,295 reviews)
The price is HK$1,392
HK$1,600 total
includes taxes & fees
14 Jun - 15 Jun

Hampton Inn & Suites San Diego Airport Liberty Station
Hampton Inn & Suites San Diego Airport Liberty Station2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,726 reviews)
The price is HK$1,343
HK$1,543 total
includes taxes & fees
30 Jun - 1 Jul

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma1.2 km from Shelter Island
9.0 out of 10, Wonderful, (35 reviews)
The price is HK$839
HK$946 total
includes taxes & fees
29 Jun - 30 Jun

TownePlace Suites by Marriott San Diego Airport/Liberty Station
TownePlace Suites by Marriott San Diego Airport/Liberty Station2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,013 reviews)
The price is HK$1,559
HK$1,792 total
includes taxes & fees
28 Jun - 29 Jun

Sea Harbor Hotel
Sea Harbor Hotel1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,014 reviews)
The price is HK$965
HK$1,088 total
includes taxes & fees
7 Jun - 8 Jun

Hilton San Diego Airport/Harbor Island
Hilton San Diego Airport/Harbor Island2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,210 reviews)
The price is HK$1,278
HK$1,469 total
includes taxes & fees
14 Jun - 15 Jun

DoubleTree by Hilton San Diego Bayside
DoubleTree by Hilton San Diego Bayside1.8 km from Shelter Island
8.4 out of 10, Very good, (1,034 reviews)
The price is HK$1,250
HK$1,437 total
includes taxes & fees
14 Jun - 15 Jun

Kona Kai San Diego
Kona Kai San Diego0.2 km from Shelter Island
8.2 out of 10, Very good, (1,009 reviews)
The price is HK$1,951
HK$2,712 total
includes taxes & fees
14 Jun - 15 Jun

Ramada by Wyndham San Diego Airport
Ramada by Wyndham San Diego Airport1.6 km from Shelter Island
7.6 out of 10, Good, (1,002 reviews)
The price is HK$992
HK$1,139 total
includes taxes & fees
29 Jun - 30 Jun

Hotel Point Loma
Hotel Point Loma1.5 km from Shelter Island
7.6 out of 10, Good, (427 reviews)
The price is HK$692
HK$780 total
includes taxes & fees
7 Jun - 8 Jun

Hotel Aqua Mar
Hotel Aqua Mar1.7 km from Shelter Island
6.4 out of 10, (1,002 reviews)
The price is HK$533
HK$601 total
includes taxes & fees
8 Jun - 9 Jun

Samesun Ocean Beach - Hostel
Samesun Ocean Beach - HostelOcean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (511 reviews)
The price is HK$458
HK$518 total
includes taxes & fees
7 Jun - 8 Jun

City24 Hotel Little Italy Mission Hills
City24 Hotel Little Italy Mission Hills5.9 km from Shelter Island
9.8 out of 10, Exceptional, (160 reviews)
The price is HK$1,110
HK$1,518 total
includes taxes & fees
15 Jun - 16 Jun

California Dreams Hostel - Ocean Beach
California Dreams Hostel - Ocean BeachPoint Loma Heights, 3.2 km from Shelter Island
8.8 out of 10, Excellent, (219 reviews)
The price is HK$776
HK$874 total
includes taxes & fees
7 Jun - 8 Jun

Holiday Inn Express San Diego Airport - Old Town by IHG
Holiday Inn Express San Diego Airport - Old Town by IHG5.5 km from Shelter Island
9.2 out of 10, Wonderful, (1,072 reviews)
The price is HK$1,253
HK$1,441 total
includes taxes & fees
8 Jun - 9 Jun

Residence Inn by Marriott San Diego Downtown/Bayfront
Residence Inn by Marriott San Diego Downtown/Bayfront5.5 km from Shelter Island
9.2 out of 10, Wonderful, (673 reviews)
The price is HK$1,928
HK$2,238 total
includes taxes & fees
1 Jul - 2 Jul

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town5.4 km from Shelter Island
9.2 out of 10, Wonderful, (1,014 reviews)
The price is HK$1,246
HK$1,432 total
includes taxes & fees
7 Jun - 8 Jun
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Compare popular hotels close to Shelter Island
Property | Property class | Guest rating | Breakfast included | Pool | Spa | Pet-friendly | WiFi included | |
|---|---|---|---|---|---|---|---|---|
![]() Bay Club Hotel & Marina | 9.2 Wonderful 3,627 reviews | View | ||||||
![]() Best Western Plus Island Palms Hotel & Marina | 9.0 Wonderful 1,606 reviews | View | ||||||
![]() Courtyard by Marriott San Diego Airport/Liberty Station | 9.2 Wonderful 1,295 reviews | View | ||||||
![]() Hampton Inn & Suites San Diego Airport Liberty Station | 9.2 Wonderful 1,726 reviews | View | ||||||
![]() LYFE INN & SUITES by AGA - San Diego Airport/Point Loma | 9.0 Wonderful 35 reviews | View |
Top Shelter Island Hotel Reviews

Best Western Yacht Harbor Hotel
6/10 Okay
Hotels near other Shelter Island attractions
Frequently asked questions
Explore a world of travel with Expedia
- 4 Star Hotels in Point Loma
- Hotels near Morena - Linda Vista Station
- La Playa Hotels
- 3 Star Hotels in Point Loma
- Hotels near Navy Pier
- Downtown San Diego Hotels
- Hotels near Fort Rosecrans National Cemetery
- Harbor Island Hotels
- Cheap Hotels in Point Loma
- Hotels near Seaport Village
- Hotels near San Diego Yacht Club
- 4 Star Hotels in Point Loma Heights
- Hotels near Hotel Circle
- Hotels near Coronado Beach
- Hotels near Sunset Cliffs Natural Park
- Luxury Hotel Hotels in Point Loma
- Red Roof Inn Hotels in Point Loma
- Noble House Hotels in Ocean Beach
- Hotels near University of San Diego
- Marina District Hotels
- Hotels near Pechanga Arena
- Little Italy Hotels
- Bar Hotel Hotels in Point Loma
- Sunset Cliffs Hotels
- Spa Hotel Hotels in Point Loma
- Hotels near Ski Beach
- Point Loma Hotels
- Bar Hotel Hotels in Coronado Island
- Hotels near San Diego Intl.
- Old Town San Diego Hotels
- Liberty Station Hotels
- Coronado Hotels
- Cheap Hotels in Ocean Beach
- Hotels near B Street Cruise Ship Terminal
- Hotels near San Diego Air and Space Museum
- Hotels near Belmont Park
- Hotels near San Diego Zoo
- Hotels near San Diego Convention Center
- Hotels near Whaley House Museum
- Mission Hills Hotels
- Flights from Burbank (BUR) to San Diego (SAN)
- Flights from Detroit (DTW) to San Diego (SAN)
- Delta Seoul (ICN) to San Diego (SAN) flights
- Flights from Bismarck (BIS) to San Diego (SAN)
- Flights from Las Vegas (LAS) to San Diego (SAN)
- Hawaiian Airlines Kailua-Kona (KOA) to San Diego (SAN) flights
- Flights from Santiago (SCL) to San Diego (SAN)
- Delta Atlanta (ATL) to San Diego (SAN) flights
- Flights from Twin Falls (TWF) to San Diego (SAN)
- Flights from Medellin (EOH) to San Diego (SAN)
- Flights from San José del Cabo (SJD) to San Diego (SAN)
- Flights from Mohe (OHE) to San Diego (SAN)
- Flights from Billings (BIL) to San Diego (SAN)
- Flights from Monterrey (NTR) to San Diego (SAN)
- Flights from Salinas (SNS) to San Diego (SAN)
- Flights from Dallas (RBD) to San Diego (SAN)
- American Airlines Nashville (BNA) to San Diego (SAN) flights
- Flights from Nadi (NAN) to San Diego (SAN)
- Flights from Medford (MFR) to San Diego (SAN)
- Flights from Querétaro (QRO) to San Diego (SAN)
- Flights from Pittsburgh (PIT) to San Diego (SAN)
- Flights from Salto (STY) to San Diego (SAN)
- Flights from Yuma (YUM) to San Diego (SAN)
- Flights from Colima (CLQ) to San Diego (SAN)
- Flights from Toronto (YYZ) to San Diego (SAN)
- Flights from Beijing (PEK) to San Diego (SAN)
- Flights from Miami (MIA) to San Diego (SAN)
- Flights from Shenzhen (SZX) to San Diego (SAN)
- Flights from Sequim (SQV) to San Diego (SAN)
- Flights from Ely (ELY) to San Diego (SAN)
- Finnair Paris (CDG) to San Diego (SAN) flights
- Flights from Sioux Falls (FSD) to San Diego (SAN)
- Flights from Mexico City (MEX) to San Diego (SAN)
- Flights from Austin (AUS) to San Diego (SAN)
- Flights from Lansing (LAN) to San Diego (SAN)
- Flights from Lidkoping (LDK) to San Diego (SAN)
- Hawaiian Airlines San Francisco (SFO) to San Diego (SAN) flights
- Flights from Salt Lake City (SLC) to San Diego (SAN)
- Air Canada Toronto (YYZ) to San Diego (SAN) flights
- American Airlines Newark Liberty Intl. Airport (EWR) to San Diego (SAN) flights
- Flights from Brainerd (BRD) to San Diego (SAN)
- All Nippon Airways Chengdu (CTU) to San Diego (SAN) flights
- Flights from Cape Town (CPT) to San Diego (SAN)
- Flights from London (LGW) to San Diego (SAN)
- Flights from Singapore (SIN) to San Diego (SAN)
- Flights from Calgary (YYC) to San Diego (SAN)
- Flights from Houston (HOU) to San Diego (SAN)
- Flights from Los Angeles (LAX) to San Diego (SAN)
- Flights from Milford Sound (MFN) to San Diego (SAN)
- Flights from Oranjemund (OMD) to San Diego (SAN)
- Flights from Phoenix (PHX) to San Diego (SAN)
- Flights from Nikolai (NIB) to San Diego (SAN)
- American Airlines Seattle (SEA) to San Diego (SAN) flights
- Hawaiian Airlines Los Angeles (LAX) to San Diego (SAN) flights
- Flights to Coronado









































































