San Diego Shelter Island Hotels: 2026 Limited-Time Hotel Deals @Expedia

A large abstract sculpture with a spiral base in a park.

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Our top choices for Shelter Island hotels

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

1. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

William

HK$1,309

HK$1,505 total

includes taxes & fees

8 Nov - 9 Nov

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A beach with sand dunes and a person walking.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

HK$1,435

HK$1,649 total

includes taxes & fees

25 Oct - 26 Oct

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

A modern lobby with a reception desk, seating area, and a large screen.

3. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Luis

HK$1,394

HK$1,602 total

includes taxes & fees

25 Oct - 26 Oct

A balcony with a table set for two, overlooking a marina with numerous boats.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A pool area with lounge chairs and umbrellas, overlooking a marina with numerous boats.

4. Bay Club Hotel & Marina

0.7 km from Shelter Island

Thuan

HK$1,144

HK$1,315 total

includes taxes & fees

4 Nov - 5 Nov

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Sarah

HK$1,107

HK$1,273 total

includes taxes & fees

3 Nov - 4 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

A modern aquarium with a celestial-themed backdrop.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

6. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

HK$1,416

HK$1,627 total

includes taxes & fees

1 Nov - 2 Nov

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A marina with boats docked, a balcony with chairs, and a view of the marina.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats, a hotel with a white facade, and a city skyline in the background.

7. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

HK$1,283

HK$1,475 total

includes taxes & fees

8 Nov - 9 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

A modern interior with a stone wall, leather sofa, and pendant lighting.

8. The Pearl Hotel

1.6 km from Shelter Island

Chloe

HK$1,231

HK$1,390 total

includes taxes & fees

25 Oct - 26 Oct

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A hotel room with two beds, a desk, and a chair.

9. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

James

HK$895

HK$1,027 total

includes taxes & fees

8 Nov - 9 Nov

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

10. Sea Harbor Hotel

1.4 km from Shelter Island

Chris

HK$865

HK$976 total

includes taxes & fees

1 Nov - 2 Nov

A square pizza on a wooden board with a fire pit in the background.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

11. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

HK$1,152

HK$1,324 total

includes taxes & fees

25 Oct - 26 Oct

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern hotel with a curved facade, multiple balconies, and large windows.

A bar area with a long wooden table, multiple bar stools, and a variety of liquor bottles and glasses.

A modern restaurant with a long wooden bar, black bar stools, and a mix of seating options including a bench and individual chairs.

12. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Kaylee

HK$1,009

HK$1,160 total

includes taxes & fees

8 Nov - 9 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

A multi-level interior with a staircase, black railings, and hanging lights.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

13. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

HK$840

HK$948 total

includes taxes & fees

11 Oct - 12 Oct

A marina with boats, a yacht, and a balcony with two chairs and a table.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

14. Kona Kai San Diego

0.2 km from Shelter Island

Michael

HK$1,563

HK$2,268 total

includes taxes & fees

25 Oct - 26 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Sheli

HK$863

HK$975 total

includes taxes & fees

26 Oct - 27 Oct

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

16. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

HK$908

HK$1,042 total

includes taxes & fees

25 Oct - 26 Oct

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A reception area with a wooden reception desk, a computer, and a chair.

17. Hotel Point Loma

1.5 km from Shelter Island

Clint

HK$660

HK$792 total

includes taxes & fees

13 Oct - 14 Oct

A modern reception area with a wooden bench and a green hedge.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

HK$664

HK$749 total

includes taxes & fees

13 Oct - 14 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

19. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

HK$448

HK$506 total

includes taxes & fees

19 Oct - 20 Oct

A living room with a round table, a blue sofa, a patterned armchair, and a potted plant.

An outdoor patio area with lounge chairs, a table, and an umbrella.

A hotel lobby with a reception desk, a chandelier, a buffet area, and a dining table with a vase and a bowl.

A reception area with a round table, vases, and a chandelier. There is a counter with a computer and a refrigerator in the background.

20. Crown City Inn

5.4 km from Shelter Island

Guillaume

HK$1,452

HK$1,597 total

includes taxes & fees

8 Nov - 9 Nov

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Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,715 reviews	View
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,691 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,248 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 3,984 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,636 reviews	View

Top Shelter Island Hotel Reviews

Sheraton San Diego Resort

8/10 Good

"Great location overall I’ll recommended to everybody with the families"

Humphreys Half Moon Inn

10/10 Excellent

"Excellent location for walking with several selection of restaurants. Property is excellently maintained like a tropical paradise. Rooms are clean and comfortable. Staff is friendly, helpful."

Best Western Yacht Harbor Hotel

10/10 Excellent

"It was all good."

Comfort Inn San Diego Airport At The Harbor

10/10 Excellent

"Great little place next to the harbor!! Unique and charming rooms"

Homewood Suites by Hilton San Diego Airport/Liberty Station

10/10 Excellent

"The rooms are nice and roomy and the balconies were a bonus. The thermostat was easy to use, which is not always the case at other hotels. Staff was friendly and accommodating. We had an issue with our key not working but they responded very quickly. We were able to communicate through text which was very helpful. The breakfast buffet is really fresh and has a variety of options! Amenities are great. We used the gym and sat outside by the fireplace. Highly recommend this hotel."

Hotel Aqua Mar

10/10 Excellent

"Perfect place to stay when headed out of San Diego airport. Walking distance to the marina. Check out Mitch's for a cold beer and fish sandwich."

Hotel Point Loma

8/10 Good

"Quick and easy place to stay before my flight in the morning."

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

10/10 Excellent

"Never got our deposit."

The Monsaraz San Diego, Tapestry Collection by Hilton

10/10 Excellent

"My friends and I stayed here for a wedding. Hotel was pretty, clean, centrally located. All staff members were very kind and helpful. Will recommend!"

Other attractions near Shelter Island

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

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Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

San Diego Shelter Island Hotels

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Treat yourself

Be picky

Check prices for these dates

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Our top choices for Shelter Island hotels

1. Hampton Inn & Suites San Diego Airport Liberty Station

2. Homewood Suites by Hilton San Diego Airport/Liberty Station

3. Courtyard by Marriott San Diego Airport/Liberty Station

4. Bay Club Hotel & Marina

5. Best Western Plus Island Palms Hotel & Marina

6. TownePlace Suites by Marriott San Diego Airport/Liberty Station

7. Hilton San Diego Airport/Harbor Island

8. The Pearl Hotel

9. Best Western Yacht Harbor Hotel

10. Sea Harbor Hotel

11. DoubleTree by Hilton San Diego Bayside

12. The Monsaraz San Diego, Tapestry Collection by Hilton

13. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

14. Kona Kai San Diego

15. Comfort Inn San Diego Airport At The Harbor

16. Ramada by Wyndham San Diego Airport

17. Hotel Point Loma

18. Hotel Aqua Mar

19. Samesun Ocean Beach - Hostel

20. Crown City Inn

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sheraton San Diego Resort

Humphreys Half Moon Inn

Best Western Yacht Harbor Hotel

Comfort Inn San Diego Airport At The Harbor

Homewood Suites by Hilton San Diego Airport/Liberty Station

Hotel Aqua Mar

Hotel Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

The Monsaraz San Diego, Tapestry Collection by Hilton

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

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