San Diego Shelter Island Hotels: 2026 Limited-Time Hotel Deals @Expedia

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Orlyn

HK$1,531

HK$1,760 total

includes taxes & fees

29 Sept - 30 Sept

A balcony with a table set for two, overlooking a marina with numerous boats.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

A spacious lobby with a reception desk, seating area, and a clear view of the elevator.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

2. Bay Club Hotel & Marina

0.7 km from Shelter Island

Jennifer

HK$1,299

HK$1,493 total

includes taxes & fees

29 Sept - 30 Sept

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A modern hotel with a prominent entrance, multiple floors, and a parking lot.

3. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

Ana Lopez

HK$1,505

HK$1,730 total

includes taxes & fees

28 Sept - 29 Sept

A resort with two-story buildings, balconies, and a pool area.

A resort with a pool, palm trees, and a building with multiple balconies.

An outdoor bar area with a pool, bar stools, and a variety of bottles.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

4. Humphreys Half Moon Inn

1 km from Shelter Island

Johnny

HK$1,483

HK$1,861 total

includes taxes & fees

4 Oct - 5 Oct

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

An outdoor patio with round tables and chairs, large umbrellas, and a marina view in the background.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Michael

HK$1,194

HK$1,372 total

includes taxes & fees

5 Oct - 6 Oct

An outdoor terrace with tables and chairs, string lights, and a view of the marina.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats docked, a balcony with chairs, and a view of the marina.

A marina with boats, a hotel with a white facade, and a city skyline in the background.

6. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

HK$1,491

HK$1,713 total

includes taxes & fees

4 Oct - 5 Oct

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

An outdoor seating area with sofas, chairs, and umbrellas, surrounded by buildings.

A modern aquarium with a celestial-themed backdrop.

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Catalina

HK$1,452

HK$1,669 total

includes taxes & fees

27 Sept - 28 Sept

A building with a sign reading "the Pearl" and a modern architectural style.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

A bathroom with a wooden bench, a mirror, shelves with toiletries, and a robe hanging on the wall.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

8. The Pearl Hotel

1.6 km from Shelter Island

Tara

HK$1,230

HK$1,390 total

includes taxes & fees

28 Sept - 29 Sept

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A modern, well-lit room with a dining area, kitchenette, and a large window offering a city view.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

9. Sea Harbor Hotel

1.4 km from Shelter Island

Kassandra

HK$999

HK$1,127 total

includes taxes & fees

27 Sept - 28 Sept

A square pizza on a wooden board with a fire pit in the background.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

10. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Akosua

HK$1,216

HK$1,398 total

includes taxes & fees

28 Sept - 29 Sept

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A gym with a treadmill, elliptical, and weight machines.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A hotel room with two beds, a desk, and a chair.

11. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Arturo

HK$1,185

HK$1,359 total

includes taxes & fees

12 Oct - 13 Oct

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A multi-level interior with a staircase, black railings, and hanging lights.

A bathroom with a marble wall, a toilet, a bathtub, a sink, and a mirror.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

12. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

HK$840

HK$947 total

includes taxes & fees

23 Sept - 24 Sept

A rooftop terrace with outdoor seating, a view of the marina, and a modern building with large windows.

A modern restaurant with a long wooden bar, black bar stools, and a mix of seating options including a bench and individual chairs.

A hotel room with two beds, a view of the city, a dining area, and a large window.

A modern hotel with a curved facade, multiple balconies, and large windows.

13. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Alexa

HK$1,116

HK$1,283 total

includes taxes & fees

28 Sept - 29 Sept

A marina with boats, a yacht, and a balcony with two chairs and a table.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

A large, domed building with a central fountain, surrounded by well-maintained gardens and a calm reflective pool.

14. Kona Kai San Diego

0.2 km from Shelter Island

Edward

HK$1,476

HK$2,167 total

includes taxes & fees

14 Oct - 15 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

A hotel rooftop with a swimming pool, outdoor seating, and a view of the marina and cityscape.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

15. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Robert

HK$821

HK$927 total

includes taxes & fees

29 Sept - 30 Sept

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, two bedside tables with lamps, a wardrobe, and a bench.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

16. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

HK$810

HK$929 total

includes taxes & fees

28 Sept - 29 Sept

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

A reception area with a wooden reception desk, a computer, and a chair.

17. Hotel Point Loma

1.5 km from Shelter Island

Vannika

HK$729

HK$870 total

includes taxes & fees

28 Sept - 29 Sept

A modern reception area with a wooden bench and a green hedge.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A beige upholstered sofa with blue and yellow patterned cushions, positioned in a room with a wooden floor and a green textured wall.

18. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

HK$628

HK$709 total

includes taxes & fees

23 Sept - 24 Sept

A couple walking hand in hand on a sandy beach with the ocean in the background.

A hotel entrance with a covered patio, outdoor seating, and large flower planters.

A narrow pathway flanked by buildings with large windows and a well-maintained garden.

A pathway flanked by lush tropical plants and a building with a large archway.

19. 1906 Lodge

5.9 km from Shelter Island

Bryan Huy

HK$2,118

HK$2,334 total

includes taxes & fees

28 Sept - 29 Sept

An outdoor patio area with seating arrangements, a pergola, and a green wall.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A two-story building with a colorful facade, a large peace sign above the entrance, and a pink picket fence in front.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

linda

HK$470

HK$531 total

includes taxes & fees

14 Oct - 15 Oct

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,691 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 3,954 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,714 reviews	View
Humphreys Half Moon Inn	9.2 Wonderful 3,127 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,625 reviews	View

Top Shelter Island Hotel Reviews

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 39 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 39 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

San Diego Shelter Island Hotels

Change your mind

Treat yourself

Be picky

Check prices for these dates

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Star rating

Guest rating

Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Bay Club Hotel & Marina

3. Hampton Inn & Suites San Diego Airport Liberty Station

4. Humphreys Half Moon Inn

5. Best Western Plus Island Palms Hotel & Marina

6. Hilton San Diego Airport/Harbor Island

7. TownePlace Suites by Marriott San Diego Airport/Liberty Station

8. The Pearl Hotel

9. Sea Harbor Hotel

10. DoubleTree by Hilton San Diego Bayside

11. Best Western Yacht Harbor Hotel

12. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

13. The Monsaraz San Diego, Tapestry Collection by Hilton

14. Kona Kai San Diego

15. Comfort Inn San Diego Airport At The Harbor

16. Ramada by Wyndham San Diego Airport

17. Hotel Point Loma

18. Hotel Aqua Mar

19. 1906 Lodge

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Bay Club Hotel & Marina

Wyndham San Diego Bayside

Sea Harbor Hotel

Comfort Inn San Diego Airport At The Harbor

Best Western Plus Island Palms Hotel & Marina

Best Western Yacht Harbor Hotel

Hotel Point Loma

The Monsaraz San Diego, Tapestry Collection by Hilton

Other attractions near Shelter Island

Sunset Cliffs Natural Park

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

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