San Diego Shelter Island Hotels: 2026 Limited-Time Hotel Deals @Expedia

Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

0.7 km from Shelter Island

Teresa

HK$1,619 total

includes taxes & fees

29 Jun - 30 Jun

Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Tesia

HK$1,578 total

includes taxes & fees

14 Jun - 15 Jun

Humphreys Half Moon Inn

1 km from Shelter Island

Ashley

HK$2,039 total

includes taxes & fees

8 Jun - 9 Jun

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Justin

HK$946 total

includes taxes & fees

29 Jun - 30 Jun

Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Rosemary

HK$1,676 total

includes taxes & fees

28 Jun - 29 Jun

Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

Patricia

HK$1,543 total

includes taxes & fees

28 Jun - 29 Jun

Sea Harbor Hotel

1.4 km from Shelter Island

Paul

HK$1,125 total

includes taxes & fees

7 Jun - 8 Jun

TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

John

HK$1,918 total

includes taxes & fees

28 Jun - 29 Jun

Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

christina

HK$1,544 total

includes taxes & fees

6 Jul - 7 Jul

Desk, blackout curtains, iron/ironing board, cots/infant beds

Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Jessica

HK$1,411 total

includes taxes & fees

17 Jun - 18 Jun

The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Joanna

HK$1,297 total

includes taxes & fees

14 Jun - 15 Jun

DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Gary

HK$1,437 total

includes taxes & fees

14 Jun - 15 Jun

Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Steve

HK$1,141 total

includes taxes & fees

7 Jun - 8 Jun

Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

carla

HK$1,108 total

includes taxes & fees

10 Jun - 11 Jun

Blackout curtains, iron/ironing board, free WiFi, bed sheets

Hotel Point Loma

1.5 km from Shelter Island

ERNESTO

HK$780 total

includes taxes & fees

7 Jun - 8 Jun

Hotel Aqua Mar

1.7 km from Shelter Island

Bruce

HK$637 total

includes taxes & fees

8 Jun - 9 Jun

Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Christine

HK$518 total

includes taxes & fees

12 Jun - 13 Jun

California Dreams Hostel - Ocean Beach

Point Loma Heights, 3.2 km from Shelter Island

BERNARDO

HK$1,006 total

includes taxes & fees

7 Jun - 8 Jun

City24 Hotel Little Italy Mission Hills

5.9 km from Shelter Island

Alexander

HK$1,558 total

includes taxes & fees

28 Jun - 29 Jun

Old Town Inn

5.2 km from Shelter Island

Andrea

HK$1,502 total

includes taxes & fees

28 Jun - 29 Jun

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Bay Club Hotel & Marina	3.5 star property	9.2 Wonderful 3,621 reviews	View
Best Western Plus Island Palms Hotel & Marina	3.0 star property	9.0 Wonderful 1,606 reviews	View
Humphreys Half Moon Inn	3.5 star property	9.2 Wonderful 2,998 reviews	View
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma	2.0 star property	9.0 Wonderful 35 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	3.0 star property	9.2 Wonderful 1,294 reviews	View

Top Shelter Island Hotel Reviews

Ramada by Wyndham San Diego Airport

8/10 Good

"The property is a little dated, but overall clean and comfortable. It’s directly across the street from San Diego‘s most prolific sport Fishing fleets, which makes it an excellent choice for out of town anglers! Additionally, they do offer paid parking so you can leave your vehicle there instead of the paid parking at Fishermans Landing for guests."

Best Western Yacht Harbor Hotel

8/10 Good

"I don't have much to complain about. The price was reasonable, the place was convenient, the parking was stress-free and free, the breakfast was decent and free, the shower was good, the bed was okay, and there was no noise. The only complaint I have is that the sink had a strong sewage odor and needed to be cleaned."

Bay Club Hotel & Marina

8/10 Good

"Great location and views of the bay and marina from Shelter Island. Room was clean and in nice shape. Gym was dirty {never vacuumed) and not kept stocked with workout towels (3 of 4 days missing) and no water cups for the water dispenser. I guess we were supposed to bring some from our room. We least early and check out was easy. The staff indicated if it would be okay to email me the receipt. I agreed so I could get going. I never received a receipt, just a miscellaneous charge for $96 on my credit card. Explanation and receipt PLEASE!"

Sheraton San Diego Resort

8/10 Good

"The stay itself was pleasant. We didn't get to use the amenities that the resort fee covered other than the pool. The view from both sides was nice. We had a view of the airport which was fun for my plane-loving son and me. The room was well-insulated so the airport noise was minimal. Everything seemed well-maintained and the staff members were very nice. Parking is expensive at $55 a day, but at least there were spots available each time. What I didn't enjoy was being charged more than the closing receipt amount (which included the $105 in fees each day), leaving a voicemail, and having no one respond for several days after which I called again. Seems shady to be charged more without a separate folio showing why. I understand being responsible for more charges but not secretly. Turns out they added a $46 a day charge for my 10 year old being "an adult" even though he was added to the room at booking with that age. Bizarre and not relayed as an accident but ultimately recovered."

Wyndham San Diego Bayside

4/10 Poor

"This hotel is in desperate need of repairs and I do not recommend staying here. First off, our room door was broken and would not close properly. One of the maids had to help us close it and even admitted that a handy man had just been there earlier in the day to try to fix it, but was clearly unable to. Also, the sprinkler in the bathroom over the sink kept leaking and the door had no lock. It's a glass door. The parking is way too expensive at $50 and another thirty some dollars for ameneties that I didn't even use! Overall, the hotel is overpriced in every aspect. I will not be returning!"

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

You can take time to visit Sunset Cliffs Natural Park during your travels to San Diego. Wander the seaside and beautiful beaches in the area.

See properties

Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 37 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.

How many hotels will I be able to find near Shelter Island?

Expedia has 37 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

San Diego Shelter Island Hotels

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

Humphreys Half Moon Inn

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Sea Harbor Hotel

TownePlace Suites by Marriott San Diego Airport/Liberty Station

Hilton San Diego Airport/Harbor Island

Best Western Yacht Harbor Hotel

The Monsaraz San Diego, Tapestry Collection by Hilton

DoubleTree by Hilton San Diego Bayside

Comfort Inn San Diego Airport At The Harbor

Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Aqua Mar

Samesun Ocean Beach - Hostel

California Dreams Hostel - Ocean Beach

City24 Hotel Little Italy Mission Hills

Old Town Inn

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Ramada by Wyndham San Diego Airport

Hotels near other Shelter Island attractions

Sunset Cliffs Natural Park

Frequently asked questions

Explore a world of travel with Expedia