A large abstract sculpture with a spiral base in a park.

San Diego Shelter Island Hotels

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Check prices for these dates

Next weekend
20 Nov - 22 Nov
In two weeks
27 Nov - 29 Nov

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
2.4 km from Shelter Island
9.4 out of 10, Exceptional, (1,709 reviews)
"Very pleasant stay."
United States
Alicia
The price is HK$1,345
HK$1,546 total
includes taxes & fees
15 Dec - 16 Dec
Homewood Suites by Hilton San Diego Airport/Liberty Station
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

2. Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,743 reviews)
"Very clean property and helpful, friendly staff."
United States
Dean
The price is HK$1,200
HK$1,380 total
includes taxes & fees
22 Nov - 23 Nov
Hampton Inn & Suites San Diego Airport Liberty Station
A table with a fire feature, a charcuterie board, and two glasses of wine, overlooking a marina with boats.

3. Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (4,077 reviews)
"Beautiful, clean hotel and friendly staff!!"
United States
Robin
The price is HK$1,123
HK$1,290 total
includes taxes & fees
15 Dec - 16 Dec
Bay Club Hotel & Marina
A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

4. Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,232 reviews)
"Not only is it a great value I appreciate the location on the waterfront"
United States
Sara
The price is HK$1,348
HK$1,549 total
includes taxes & fees
22 Nov - 23 Nov
Courtyard by Marriott San Diego Airport/Liberty Station
A resort with two-story buildings, balconies, and a pool area.

5. Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (3,160 reviews)
"Incredibly clean property, incredibly kind and hospitable staff (everyone you interact with), and maybe the best breakfast options I've seen at a hotel restaurant!"
United States
David
The price is HK$1,247
HK$1,591 total
includes taxes & fees
14 Dec - 15 Dec
Humphreys Half Moon Inn
An outdoor patio with string lights, tables, chairs, and a bar area with bottles.

6. Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,222 reviews)
"Nice view of the harbor"
United States
Alan
The price is HK$1,216
HK$1,398 total
includes taxes & fees
29 Nov - 30 Nov
Hilton San Diego Airport/Harbor Island
A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

7. Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,623 reviews)
"Excellent location, great amenities and easy parking close to room."
Australia
Adam
The price is HK$1,094
HK$1,257 total
includes taxes & fees
16 Dec - 17 Dec
Best Western Plus Island Palms Hotel & Marina
A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
8.8 out of 10, Excellent, (1,000 reviews)
"Such a great place to stay"
United States
Chase
The price is HK$1,335
HK$1,534 total
includes taxes & fees
22 Nov - 23 Nov
TownePlace Suites by Marriott San Diego Airport/Liberty Station
A building with a sign reading "the Pearl" and a modern design with large windows and a stone facade.

9. The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,002 reviews)
"This was the absolute cutest property and best stay!!! Wish we could have stayed longer. Food and drinks were fantastic and the property is absolutely adorable!!"
United States
Kelsey
The price is HK$1,074
HK$1,213 total
includes taxes & fees
15 Dec - 16 Dec
The Pearl Hotel
A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

10. Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.4 out of 10, Very good, (1,090 reviews)
"The location is great."
United States
Roxanne
The price is HK$770
HK$868 total
includes taxes & fees
17 Nov - 18 Nov
Sea Harbor Hotel
A square pizza on a wooden board with a fire pit in the background.

11. DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,105 reviews)
"Great location on the water with great views."
Canada
Mike
The price is HK$1,087
HK$1,250 total
includes taxes & fees
22 Nov - 23 Nov
DoubleTree by Hilton San Diego Bayside
A rooftop terrace with outdoor seating, a view of the marina, and a modern building with balconies.

12. The Monsaraz San Diego, Tapestry Collection by Hilton

The Monsaraz San Diego, Tapestry Collection by Hilton
3.5 star property
1.6 km from Shelter Island
8.4 out of 10, Very good, (866 reviews)
"Great stay."
United States
Jocelyn
The price is HK$1,216
HK$1,398 total
includes taxes & fees
22 Nov - 23 Nov
The Monsaraz San Diego, Tapestry Collection by Hilton
A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

13. Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.4 out of 10, Very good, (2,118 reviews)
"Clean rooms, great breakfast"
United States
Elizabeth
The price is HK$855
HK$981 total
includes taxes & fees
16 Nov - 17 Nov
Best Western Yacht Harbor Hotel
A marina with boats, a yacht, and a balcony with two chairs and a table.

14. Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.3 km from Shelter Island
8.2 out of 10, Very good, (1,001 reviews)
"Place was great would stay again"
United States
James Jeffrey
The price is HK$1,434
HK$2,231 total
includes taxes & fees
29 Nov - 30 Nov
Kona Kai San Diego
A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
8.0 out of 10, Very good, (201 reviews)
"Clean room nice staff quiet place overall and in a good area."
United States
Carolina
The price is HK$840
HK$947 total
includes taxes & fees
6 Dec - 7 Dec
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

16. Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,752 reviews)
"Great place! Better location and wonderful Staff"
United States
JJ
The price is HK$770
HK$869 total
includes taxes & fees
30 Nov - 1 Dec
Comfort Inn San Diego Airport At The Harbor
A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

17. Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.8 out of 10, Good, (530 reviews)
"Quick and easy place to stay before my flight in the morning."
Canada
Clint
The price is HK$729
HK$870 total
includes taxes & fees
19 Nov - 20 Nov
Hotel Point Loma
A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

18. Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,003 reviews)
"We are a repeat guest.A great location, great amenities & breakfast. Hotel staff was polite, a nice stay."
United States
Diana
The price is HK$709
HK$814 total
includes taxes & fees
17 Nov - 18 Nov
Ramada by Wyndham San Diego Airport
A modern reception area with a wooden bench and a green hedge.

19. Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,001 reviews)
"Great place to stay. I needed a simple room and bathroom. It was clean, comfortable, the towels were nice and the location was perfect. Enjoyed it!"
United States
Kathryn
The price is HK$664
HK$749 total
includes taxes & fees
29 Nov - 30 Nov
Hotel Aqua Mar
An outdoor patio area with seating arrangements, a pergola, and a green wall.

20. Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (633 reviews)
"Always a great stay!"
United States
Robert
The price is HK$433
HK$489 total
includes taxes & fees
30 Nov - 1 Dec
Samesun Ocean Beach - Hostel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.
Homewood Suites by Hilton San Diego Airport/Liberty Station
3.0 star property
9.4
Exceptional
1,709 reviews
View
A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,743 reviews
View
A table with a fire feature, a charcuterie board, and two glasses of wine, overlooking a marina with boats.
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
4,077 reviews
View
A hotel courtyard with outdoor seating, palm trees, and a view of the sea.
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,232 reviews
View
A resort with two-story buildings, balconies, and a pool area.
Humphreys Half Moon Inn
3.5 star property
9.2
Wonderful
3,160 reviews
View

Top Shelter Island Hotel Reviews

Wyndham San Diego Bayside

Wyndham San Diego Bayside

8/10 Good
"We were charged a 30$ “destination fee” that I didn’t notice at checkout. Location was perfect for checking into a cruise the next morning, perfect for using the trolly to old town or little italy, and a beautiful harbor stroll in the morning though."
Ashlee 1-night trip
Posted 9 hours ago
Wyndham San Diego Bayside

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.
See properties

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.
How many hotels will I be able to find near Shelter Island?
Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

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