San Diego Shelter Island Hotels

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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,627 reviews)
"Loved my stay there."
United States
Teresa
The price is HK$1,396
HK$1,605 total
includes taxes & fees
29 Jun - 30 Jun
Bay Club Hotel & Marina

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
9.0 out of 10, Wonderful, (1,606 reviews)
"Great location. Comfortable rooms and great views."
United States
Tesia
The price is HK$1,373
HK$1,578 total
includes taxes & fees
14 Jun - 15 Jun
Best Western Plus Island Palms Hotel & Marina

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,295 reviews)
"Great location, good parking, great staff."
United States
Rosemary
The price is HK$1,392
HK$1,600 total
includes taxes & fees
14 Jun - 15 Jun
Courtyard by Marriott San Diego Airport/Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station

Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
2.7 km from Shelter Island
9.2 out of 10, Wonderful, (1,725 reviews)
"Good location, clean room and nice staff. A great place to stay."
United States
Patricia
The price is HK$1,343
HK$1,543 total
includes taxes & fees
30 Jun - 1 Jul
Hampton Inn & Suites San Diego Airport Liberty Station

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
1.2 km from Shelter Island
9.0 out of 10, Wonderful, (35 reviews)
"Near airport."
United States
Justin
The price is HK$1,036
HK$1,169 total
includes taxes & fees
7 Jul - 8 Jul
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

TownePlace Suites by Marriott San Diego Airport/Liberty Station

TownePlace Suites by Marriott San Diego Airport/Liberty Station
3.0 star property
2.8 km from Shelter Island
9.0 out of 10, Wonderful, (1,013 reviews)
"Great location! Nice walk to Liberty Station Public Market for dinner 😊"
United States
John
The price is HK$1,559
HK$1,792 total
includes taxes & fees
29 Jun - 30 Jun
TownePlace Suites by Marriott San Diego Airport/Liberty Station

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,014 reviews)
"The room we had was comfortable and modern and the location is terrific!"
United States
Paul
The price is HK$998
HK$1,125 total
includes taxes & fees
7 Jun - 8 Jun
Sea Harbor Hotel

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,210 reviews)
"I enjoyed to fresh sent of the hotel and the very friendly workers :)"
United States
christina
The price is HK$1,278
HK$1,469 total
includes taxes & fees
14 Jun - 15 Jun
Hilton San Diego Airport/Harbor Island

DoubleTree by Hilton San Diego Bayside

DoubleTree by Hilton San Diego Bayside
3.0 star property
1.8 km from Shelter Island
8.4 out of 10, Very good, (1,034 reviews)
"Great restaurants"
United States
Gary
The price is HK$1,250
HK$1,437 total
includes taxes & fees
14 Jun - 15 Jun
DoubleTree by Hilton San Diego Bayside

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,009 reviews)
"We had a wonder visit from the moment we step into the resort. The Front desk staff help out us out with checking in, they even waived the parking fee. The rooms were clean and very comfortable. the views of courtyard and boats were great to see. We had a wonderful time and can't wait to book another visit."
United States
Michael
The price is HK$1,951
HK$2,712 total
includes taxes & fees
14 Jun - 15 Jun
Kona Kai San Diego

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.6 out of 10, Good, (1,002 reviews)
"Parking was handy Staff very kind, thoughtful and helpful"
Canada
carla
The price is HK$1,006
HK$1,154 total
includes taxes & fees
29 Jun - 30 Jun
Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.6 out of 10, Good, (427 reviews)
"Nice stay for 2 nights. Close to coffee shops and restaurants."
United States
ERNESTO
The price is HK$692
HK$780 total
includes taxes & fees
7 Jun - 8 Jun
Hotel Point Loma

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,002 reviews)
"fairly priced hotel"
United States
Bruce
The price is HK$946
HK$1,066 total
includes taxes & fees
6 Jul - 7 Jul
Hotel Aqua Mar

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (511 reviews)
"Excellent stay, clean and nice people!"
United States
Christine
The price is HK$458
HK$518 total
includes taxes & fees
7 Jun - 8 Jun
Samesun Ocean Beach - Hostel

1906 Lodge

1906 Lodge
3.5 star property
5.9 km from Shelter Island
9.8 out of 10, Exceptional, (977 reviews)
"All around great lodge, location, staff, breakfast, happy hour."
United States
Thomas
The price is HK$2,421
HK$2,668 total
includes taxes & fees
29 Jun - 30 Jun
1906 Lodge

City24 Hotel Little Italy Mission Hills

City24 Hotel Little Italy Mission Hills
4.5 star property
5.9 km from Shelter Island
9.8 out of 10, Exceptional, (160 reviews)
"Nice and very friendly staff was a great stay"
United States
Alexander
The price is HK$1,110
HK$1,518 total
includes taxes & fees
15 Jun - 16 Jun
City24 Hotel Little Italy Mission Hills

California Dreams Hostel - Ocean Beach

California Dreams Hostel - Ocean Beach
2.0 star property
Point Loma Heights, 3.2 km from Shelter Island
8.8 out of 10, Excellent, (219 reviews)
"Great place"
United States
BERNARDO
The price is HK$776
HK$874 total
includes taxes & fees
7 Jun - 8 Jun
California Dreams Hostel - Ocean Beach

Holiday Inn Express San Diego Airport - Old Town by IHG

Holiday Inn Express San Diego Airport - Old Town by IHG
2.5 star property
5.5 km from Shelter Island
9.2 out of 10, Wonderful, (1,072 reviews)
"Staff was so great nice rooms really great stay"
United States
Amelia
The price is HK$1,253
HK$1,441 total
includes taxes & fees
8 Jun - 9 Jun
Holiday Inn Express San Diego Airport - Old Town by IHG

Residence Inn by Marriott San Diego Downtown/Bayfront

Residence Inn by Marriott San Diego Downtown/Bayfront
3.0 star property
5.5 km from Shelter Island
9.2 out of 10, Wonderful, (673 reviews)
"I will definitely stay there again !"
United States
Diana
The price is HK$1,928
HK$2,238 total
includes taxes & fees
1 Jul - 2 Jul
Residence Inn by Marriott San Diego Downtown/Bayfront

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
5.4 km from Shelter Island
9.2 out of 10, Wonderful, (1,013 reviews)
"Staff was amazing and loved the place"
United States
Angela
The price is HK$1,246
HK$1,432 total
includes taxes & fees
7 Jun - 8 Jun
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Compare popular hotels close to Shelter Island

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
Exterior
Bay Club Hotel & Marina
3.5 star property
9.2
Wonderful
3,627 reviews
View
Exterior
Best Western Plus Island Palms Hotel & Marina
3.0 star property
9.0
Wonderful
1,606 reviews
View
Courtyard view
Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
9.2
Wonderful
1,295 reviews
View
Lobby
Hampton Inn & Suites San Diego Airport Liberty Station
2.5 star property
9.2
Wonderful
1,725 reviews
View
Terrace/patio
LYFE INN & SUITES by AGA - San Diego Airport/Point Loma
2.0 star property
9.0
Wonderful
35 reviews
View

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 37 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 37 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

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