San Diego Shelter Island Hotels: 2026 Limited-Time Hotel Deals @Expedia

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Our top choices for Shelter Island hotels

A hotel complex with multiple buildings, a landscaped garden, and a body of water reflecting the sunset.

A modern kitchen area with wooden cabinets, marble countertops, and a central island with plates.

A pool area with lounge chairs, a palm tree, and a view of a bridge and buildings in the background.

A hotel with a well-maintained lawn, outdoor lighting, and a clear view of the building's facade.

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2.4 km from Shelter Island

Alicia

HK$1,434

HK$1,648 total

includes taxes & fees

10 Nov - 11 Nov

A spacious lobby with a large seating area, a wooden ceiling, and large windows offering a view of the outdoor patio area.

A spacious hotel lobby with a mix of seating arrangements, including a sofa, round tables, and chairs.

An outdoor seating area with tables and chairs, umbrellas, and a fire feature.

A modern lobby with wooden ceiling beams, comfortable seating with yellow cushions, a large wooden coffee table, and large windows offering a view of palm trees and a sunset.

2. Hampton Inn & Suites San Diego Airport Liberty Station

2.7 km from Shelter Island

MANUEL

HK$1,158

HK$1,331 total

includes taxes & fees

22 Nov - 23 Nov

A hotel courtyard with outdoor seating, palm trees, and a view of the sea.

A modern lobby with a reception desk, seating area, and a large screen.

A bar area with multiple seating options, a well-stocked bar, and a television screen.

A Courtyard by Marriott hotel with a well-lit courtyard, outdoor seating, and a view of the surrounding area.

3. Courtyard by Marriott San Diego Airport/Liberty Station

2.6 km from Shelter Island

Jaycie Nicole

HK$1,459

HK$1,677 total

includes taxes & fees

1 Nov - 2 Nov

A balcony with a table set for two, overlooking a marina with numerous boats.

A marina with multiple boats docked, a multi-story building with outdoor seating, and a clear view of the surrounding coastline.

A modern hotel room with a balcony, a sofa, a chair, a coffee table, and two bedside tables with lamps.

A pool area with lounge chairs and umbrellas, overlooking a marina with numerous boats.

4. Bay Club Hotel & Marina

0.7 km from Shelter Island

Victoria

HK$1,193

HK$1,371 total

includes taxes & fees

26 Oct - 27 Oct

A modern building with a sloped roof and large windows, surrounded by palm trees and a well-maintained garden.

A restaurant with high ceilings, large windows, and a patterned carpet. Tables are set with chairs and place settings.

A hotel entrance with a modern design, palm trees, and a sign indicating it is part of the Best Western Plus chain.

A spacious lobby with a high ceiling, stone flooring, and wicker furniture.

5. Best Western Plus Island Palms Hotel & Marina

0.4 km from Shelter Island

Julie

HK$987

HK$1,134 total

includes taxes & fees

22 Nov - 23 Nov

A resort with two-story buildings, balconies, and a pool area.

A restaurant with a view of a marina, featuring high ceilings, modern lighting, and a central chandelier.

A resort with a pool, palm trees, and a building with multiple balconies.

A canal lined with palm trees and a row of buildings with balconies.

6. Humphreys Half Moon Inn

1 km from Shelter Island

Svenja

HK$1,247

HK$1,590 total

includes taxes & fees

23 Nov - 24 Nov

An outdoor patio with string lights, tables, chairs, and a bar area with bottles.

A coastal view with a marina, buildings, and a clear sky.

A dining table set with plates, glasses, and a bottle of wine, overlooking a marina with boats.

A marina with boats docked, a balcony with chairs, and a view of the water.

7. Hilton San Diego Airport/Harbor Island

2.5 km from Shelter Island

Amos

HK$1,280

HK$1,471 total

includes taxes & fees

8 Nov - 9 Nov

A spacious lounge area with a high ceiling, a fireplace, and large windows offering a view of the outdoors.

A spacious hotel lobby with a geometric patterned carpet, leather armchairs, a sofa, and a dining table. Large windows offer views of the outside.

A hotel pool area with lounge chairs and umbrellas, surrounded by palm trees and a brick walkway.

A modern aquarium with a celestial-themed backdrop.

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

2.8 km from Shelter Island

Chase

HK$1,334

HK$1,533 total

includes taxes & fees

22 Nov - 23 Nov

A building with a sign reading "the Pearl" and a modern architectural style.

A modern interior with a stone wall, leather sofa, and pendant lighting.

A poolside area with a bar and outdoor seating, surrounded by a building with a balcony and string lights.

A modern bedroom with a bed, a TV mounted on the wall, and a window with curtains.

9. The Pearl Hotel

1.6 km from Shelter Island

Jane

HK$1,230

HK$1,389 total

includes taxes & fees

2 Nov - 3 Nov

A hotel room with two beds, a desk, a chair, and a large window with a view of the outdoors.

A modern hotel room with a blue sofa, a grey armchair, a round coffee table, and a large window offering a view of the outdoors.

A modern kitchen with a coffee station, a dining area with a large table and chairs, and a carpeted floor.

A hotel room with two beds, a desk, and a chair.

10. Best Western Yacht Harbor Hotel

1.7 km from Shelter Island

Elizabeth

HK$894

HK$1,026 total

includes taxes & fees

8 Nov - 9 Nov

A square pizza on a wooden board with a fire pit in the background.

A hotel with a courtyard featuring palm trees, a golf course, and a building with balconies.

A spacious indoor dining area with high ceilings, wooden beams, and a mix of booth and table seating.

11. DoubleTree by Hilton San Diego Bayside

1.8 km from Shelter Island

Thomas

HK$1,087

HK$1,249 total

includes taxes & fees

22 Nov - 23 Nov

12. The Monsaraz San Diego, Tapestry Collection by Hilton

1.6 km from Shelter Island

Deborah

HK$1,215

HK$1,397 total

includes taxes & fees

15 Nov - 16 Nov

A well-lit retail area with shelves displaying various products, a poolside view, and a palm tree.

A marina filled with numerous boats, a distant city skyline, and a clear blue sky.

A modern hotel lobby with white furniture, wooden flooring, and a reception desk.

A hotel room with a large bed, a chair, a small table, and a window with a view of palm trees and parked cars outside.

13. Sea Harbor Hotel

1.4 km from Shelter Island

Roxanne

HK$819

HK$923 total

includes taxes & fees

10 Nov - 11 Nov

A marina with boats, a yacht, and a balcony with two chairs and a table.

A hotel with a Mediterranean architectural style, featuring a curved entrance, palm trees, and a well-lit driveway.

A bar area with a curved ceiling, hanging light fixtures, and a large screen displaying a tropical scene.

A pool area with lounge chairs and umbrellas, a bar, and a view of boats in the background.

14. Kona Kai San Diego

0.3 km from Shelter Island

Michael

HK$1,562

HK$2,266 total

includes taxes & fees

1 Nov - 2 Nov

A balcony with a sofa, chairs, and a small table, overlooking a clear blue sky and palm trees.

A hotel with a sign reading 'LYFE INN SUITES,' a two-story structure with a balcony on the second floor, and a parking lot in front.

A multi-level interior with a staircase, black railings, and hanging lights.

A neatly made bed with white linens and multiple pillows, a bedside table with a clock and books, and a wall-mounted lamp.

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

1.2 km from Shelter Island

Carolina

HK$840

HK$947 total

includes taxes & fees

26 Oct - 27 Oct

An aerial view of a marina with numerous boats docked, surrounded by a residential area with buildings and streets.

A hotel room with two beds, a desk, a chair, a TV, and a window with blinds.

A restaurant with a breakfast bar, ceiling fans, and a kitchen area with appliances.

A rooftop patio with wicker furniture and palm trees, overlooking a marina.

16. Comfort Inn San Diego Airport At The Harbor

1.6 km from Shelter Island

Sean

HK$733

HK$828 total

includes taxes & fees

17 Nov - 18 Nov

A marina with numerous boats docked, a clear sky with the sun setting, and a cityscape in the background.

A hotel room with a large bed, a red armchair, a balcony with a view of boats and buildings, and a lamp on the nightstand.

A kitchen with wooden cabinets, a microwave, a coffee machine, and a refrigerator.

A modern hotel lobby with a wooden floor, two white armchairs, a reception desk, an ATM, and a staircase.

17. Ramada by Wyndham San Diego Airport

1.6 km from Shelter Island

Aaron

HK$809

HK$929 total

includes taxes & fees

27 Oct - 28 Oct

A bedroom with a bed, a nightstand, a TV, and a view of the outdoors.

A reception area with a wooden reception desk, a computer, and a chair.

A motel with a covered parking area, a blue car parked in the lot, and a building with blue doors.

A compact kitchen with a refrigerator, microwave, sink, and a small countertop.

18. Hotel Point Loma

1.5 km from Shelter Island

Clint

HK$664

HK$748 total

includes taxes & fees

26 Oct - 27 Oct

A modern reception area with a wooden bench and a green hedge.

A modern hotel with a prominent 'HOTEL AQUA MAR' sign, large windows, and a visible seating area inside.

A hotel room with two beds, a blue wall, a beach-themed artwork, and a window with curtains.

19. Hotel Aqua Mar

1.7 km from Shelter Island

Kathryn

HK$597

HK$673 total

includes taxes & fees

26 Oct - 27 Oct

An outdoor patio area with seating arrangements, a pergola, and a green wall.

An outdoor patio with tables and chairs, surrounded by tropical plants and artwork.

A hotel room with a bed, a chair, a small table, a plant, and a door leading to a bathroom.

A hallway with wooden flooring, a framed artwork of a turtle, and a trash bin.

20. Samesun Ocean Beach - Hostel

Ocean Beach, 4.3 km from Shelter Island

Robert

HK$431

HK$487 total

includes taxes & fees

1 Nov - 2 Nov

View all properties

Compare popular hotels close to Shelter Island

Property	Property class	Guest rating
Homewood Suites by Hilton San Diego Airport/Liberty Station	9.4 Exceptional 1,702 reviews	View
Hampton Inn & Suites San Diego Airport Liberty Station	9.2 Wonderful 1,741 reviews	View
Courtyard by Marriott San Diego Airport/Liberty Station	9.2 Wonderful 1,244 reviews	View
Bay Club Hotel & Marina	9.2 Wonderful 4,044 reviews	View
Best Western Plus Island Palms Hotel & Marina	9.0 Wonderful 1,623 reviews	View

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

8/10 Good

"Close to shelter island and clean, good price"

Wyndham San Diego Bayside

10/10 Excellent

"Really great stay no complaints or a small complaint but nothing serious the closet door in bathroom not wanting to stay closed. But great location a lot to do around there."

Bay Club Hotel & Marina

8/10 Good

"The location and price were great. Staff very friendly and efficient. The rooms was a little tired and bed too firm for our liking. But overall, we enjoyed it."

Best Western Yacht Harbor Hotel

8/10 Good

"When the knob of the shower came off in my hand, someone came up and fixed it within 10 minutes… That’s pretty good. But why did the knob come off in the first place? Otherwise, a very nice, but simple place but decent."

The Pearl Hotel

10/10 Excellent

"Convenient location. Cool place. Clean and comfortable room. Definitely will start again."

Best Western Plus Island Palms Hotel & Marina

10/10 Excellent

"Second time staying here! Clean, comfortable and convenient location!"

Other attractions near Shelter Island

Vessel Restaurant

After visiting Vessel Restaurant, make a plan to see the other sights and activities in San Diego. In the area, take in the great live music and beautiful sunsets.

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Kellogs Beach

Why not spend a lazy afternoon at Kellogs Beach during your trip to San Diego? Wander the seaside and beautiful beaches in the area.

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Humphreys Concerts by the Bay

7.4/10 (6 reviews)

You can enjoy a show at Humphreys Concerts by the Bay on your trip to San Diego. Discover the beautiful sunsets and top-notch restaurants in this walkable area.

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Humphreys Backstage Live

Humphreys Backstage Live is just one of the places to see in San Diego, so why not enjoy the other things to explore during your travels? Stroll along the waterfront or discover the area's beautiful sunsets.

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USS Recruit

You can spend time exploring the galleries in USS Recruit during your trip to San Diego. Stroll along the area's marina or experience its great live music.

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Liberty Station Conference Center

Learn about the events happening in Liberty Station Conference Center during your trip to San Diego. Wander the seaside and beautiful beaches in the area.

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Frequently asked questions

What's the area like around Shelter Island?

Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 38 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Shelter Island?

Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Humphreys Half Moon Inn.

How many hotels will I be able to find near Shelter Island?

Expedia has 38 hotels and other accommodation options within a mile from Shelter Island.

If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?

Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.

What can I see and do near Shelter Island?

You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or Whaley House Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

San Diego Shelter Island Hotels

Change your mind

Treat yourself

Be picky

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Shelter Island hotels

1. Homewood Suites by Hilton San Diego Airport/Liberty Station

2. Hampton Inn & Suites San Diego Airport Liberty Station

3. Courtyard by Marriott San Diego Airport/Liberty Station

4. Bay Club Hotel & Marina

5. Best Western Plus Island Palms Hotel & Marina

6. Humphreys Half Moon Inn

7. Hilton San Diego Airport/Harbor Island

8. TownePlace Suites by Marriott San Diego Airport/Liberty Station

9. The Pearl Hotel

10. Best Western Yacht Harbor Hotel

11. DoubleTree by Hilton San Diego Bayside

12. The Monsaraz San Diego, Tapestry Collection by Hilton

13. Sea Harbor Hotel

14. Kona Kai San Diego

15. LYFE INN & SUITES by AGA - San Diego Airport/Point Loma

16. Comfort Inn San Diego Airport At The Harbor

17. Ramada by Wyndham San Diego Airport

18. Hotel Point Loma

19. Hotel Aqua Mar

20. Samesun Ocean Beach - Hostel

Compare popular hotels close to Shelter Island

Top Shelter Island Hotel Reviews

Sea Harbor Hotel

Wyndham San Diego Bayside

Bay Club Hotel & Marina

Best Western Yacht Harbor Hotel

The Pearl Hotel

Best Western Plus Island Palms Hotel & Marina

Other attractions near Shelter Island

Vessel Restaurant

Kellogs Beach

Humphreys Concerts by the Bay

Humphreys Backstage Live

USS Recruit

Liberty Station Conference Center

Frequently asked questions

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