San Diego Shelter Island Hotels

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Our top choices for Shelter Island hotels

Bay Club Hotel & Marina

Bay Club Hotel & Marina
3.5 star property
0.7 km from Shelter Island
9.2 out of 10, Wonderful, (3,306 reviews)
"Beautiful location, great staff, always a pleasure to stay here"
United States
simona
The price is HK$975
HK$1,121 total
includes taxes & fees
22 Jan - 23 Jan
Bay Club Hotel & Marina

Humphreys Half Moon Inn

Humphreys Half Moon Inn
3.5 star property
1 km from Shelter Island
9.2 out of 10, Wonderful, (2,750 reviews)
"Great stay, highly recommend."
United States
Ryan
The price is HK$1,318
HK$1,671 total
includes taxes & fees
2 Feb - 3 Feb
Humphreys Half Moon Inn

Best Western Plus Island Palms Hotel & Marina

Best Western Plus Island Palms Hotel & Marina
3.0 star property
0.4 km from Shelter Island
8.8 out of 10, Excellent, (1,564 reviews)
"Great place.very clean great for family would definitely stay there again."
United States
Joseph
The price is HK$1,044
HK$1,200 total
includes taxes & fees
21 Jan - 22 Jan
Best Western Plus Island Palms Hotel & Marina

Courtyard by Marriott San Diego Airport/Liberty Station

Courtyard by Marriott San Diego Airport/Liberty Station
3.0 star property
2.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,345 reviews)
"Our room was clean, well stocked staff was great & very comfortable bed."
United States
Benny
The price is HK$1,311
HK$1,507 total
includes taxes & fees
25 Jan - 26 Jan
Courtyard by Marriott San Diego Airport/Liberty Station

The Pearl Hotel

The Pearl Hotel
4.0 star property
1.6 km from Shelter Island
8.8 out of 10, Excellent, (1,004 reviews)
"Lovely spot would stay again "
United States
danixa
The price is HK$954
HK$1,078 total
includes taxes & fees
28 Jan - 29 Jan
The Pearl Hotel

Sea Harbor Hotel

Sea Harbor Hotel
2.0 star property
1.4 km from Shelter Island
8.6 out of 10, Excellent, (1,010 reviews)
"Super clean rooms and a great location "
United States
Mark
Sea Harbor Hotel

Best Western Yacht Harbor Hotel

Best Western Yacht Harbor Hotel
2.5 star property
1.7 km from Shelter Island
8.6 out of 10, Excellent, (1,686 reviews)
"Great rate for a great stay!"
Canada
James
The price is HK$873
HK$1,002 total
includes taxes & fees
22 Jan - 23 Jan
Best Western Yacht Harbor Hotel

Kona Kai San Diego

Kona Kai San Diego
4.0 star property
0.2 km from Shelter Island
8.2 out of 10, Very good, (1,001 reviews)
"Nice staff"
United States
Erika
The price is HK$1,553
HK$2,253 total
includes taxes & fees
30 Jan - 31 Jan
Kona Kai San Diego

Hilton San Diego Airport/Harbor Island

Hilton San Diego Airport/Harbor Island
3.5 star property
2.5 km from Shelter Island
8.8 out of 10, Excellent, (1,204 reviews)
"Friendly staff, clean rooms and beautiful views. Location was great for cruise port. "
United States
Claudia
The price is HK$1,272
HK$1,462 total
includes taxes & fees
8 Feb - 9 Feb
Hilton San Diego Airport/Harbor Island

Comfort Inn San Diego Airport At The Harbor

Comfort Inn San Diego Airport At The Harbor
3.5 star property
1.6 km from Shelter Island
7.8 out of 10, Good, (1,263 reviews)
"Great room, clean property and courteous staff"
United States
Reginald D.
The price is HK$719
HK$813 total
includes taxes & fees
27 Jan - 28 Jan
Comfort Inn San Diego Airport At The Harbor

Ramada by Wyndham San Diego Airport

Ramada by Wyndham San Diego Airport
3.0 star property
1.6 km from Shelter Island
7.4 out of 10, Good, (1,008 reviews)
"Very pleasent reception staff. "
United States
Anil S V
The price is HK$687
HK$788 total
includes taxes & fees
27 Jan - 28 Jan
Ramada by Wyndham San Diego Airport

Hotel Point Loma

Hotel Point Loma
2.0 star property
1.5 km from Shelter Island
7.4 out of 10, Good, (362 reviews)
"Great staff and very friendly "
United States
Nalani
Hotel Point Loma

Hotel Aqua Mar

Hotel Aqua Mar
2.0 star property
1.7 km from Shelter Island
6.4 out of 10, (1,003 reviews)
"Room and bathroom were very clean loved that had microwave refrigerator disappointed didn’t have coffee pot"
United States
Pedro
Hotel Aqua Mar

Sunrise Inn San Diego

Sunrise Inn San Diego
2.0 star property
1.2 km from Shelter Island
5.6 out of 10, (1,004 reviews)
"For the price and location this hotel is great. My go to when I’m down in San Diego and don’t want to break the bank "
United States
carmina
Sunrise Inn San Diego

Samesun Ocean Beach - Hostel

Samesun Ocean Beach - Hostel
2.0 star property
Ocean Beach, 4.3 km from Shelter Island
9.6 out of 10, Exceptional, (403 reviews)
"Clean rooms, decent staff, decent breakfast, good location"
United States
Minhaz
Samesun Ocean Beach - Hostel

The Inn at Sunset Cliffs

The Inn at Sunset Cliffs
2.5 star property
Ocean Beach, 3.6 km from Shelter Island
9.2 out of 10, Wonderful, (1,006 reviews)
"Great location, staff was so friendly and courteous, and amazing views!"
United States
Katrina
The price is HK$1,715
HK$1,934 total
includes taxes & fees
22 Jan - 23 Jan
The Inn at Sunset Cliffs

California Dreams Hostel - Ocean Beach

California Dreams Hostel - Ocean Beach
2.0 star property
3.2 km from Shelter Island
8.8 out of 10, Excellent, (206 reviews)
"Good place to stay 🙌, breakfast was really good."
United States
Efren
California Dreams Hostel - Ocean Beach

Crown City Inn

Crown City Inn
2.5 star property
5.4 km from Shelter Island
9.6 out of 10, Exceptional, (673 reviews)
"wonderful, convenient, amazing staff, small but well appointed rooms. "
United States
Bruce
Crown City Inn

1906 Lodge

1906 Lodge
3.5 star property
5.9 km from Shelter Island
9.8 out of 10, Exceptional, (902 reviews)
"We loved staying here. Great hospitality and service to guests. Location was great with restaurants and the beach within walking distance."
United States
Scott
The price is HK$1,941
HK$2,139 total
includes taxes & fees
22 Jan - 23 Jan
1906 Lodge

Cherokee Lodge

Cherokee Lodge
2.5 star property
5.3 km from Shelter Island
9.4 out of 10, Exceptional, (853 reviews)
"Really nice little place, will be back"
United States
Brian
The price is HK$1,318
HK$1,449 total
includes taxes & fees
5 Feb - 6 Feb
Cherokee Lodge
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Shelter Island Hotel Reviews

Hotels near other Shelter Island attractions

Frequently asked questions

What's the area like around Shelter Island?
Shelter Island is located in a family-friendly area of San Diego known for its beautiful island views and great live music scene. If you're looking for a convenient place to stay, take a look at the 46 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Shelter Island?
Adjacent to Shelter Island, Best Western Plus Island Palms Hotel & Marina is one of the top choices for your stay based on our traveller data, and this hotel offers a marina and 2 outdoor pools. Other good choices within a short distance include Bay Club Hotel & Marina and Kona Kai San Diego.
How many hotels will I be able to find near Shelter Island?
Expedia has 46 hotels and other accommodation options within a mile from Shelter Island.
If I need to cancel the hotel reservation for my stay near Shelter Island, will I receive a refund?
Yes! Most hotel room reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of your booking. Add dates, click "Search", then you can use the "fully refundable" filter to get the best deals near Shelter Island.
What can I see and do near Shelter Island?
You might want to spend some time browsing the exhibits at USS Midway Museum, Maritime Museum of San Diego or San Diego Air and Space Museum. Explore notable local landmarks like Hotel del Coronado, Point Loma Lighthouse and Star of India. You can check out the local talent at Humphreys Concerts by the Bay, The Rady Shell at Jacobs Park and San Diego Civic Theatre.

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