Best Henderson Harbor Hotels in 2026 from HK$505 - Fully Refundable Options

A large body of water surrounded by dense forests and a winding road.

Change your mind
Book hotels with free cancellation
Treat yourself
Sign in to save 10% or more on thousands of hotels
Sign in
Be picky
Search almost a million properties worldwide

Go beyond your typical stay in Henderson Harbor

Pet friendly

Apartment

Pool

Family friendly

Waterpark

Condo

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Henderson Harbor hotels

A building with a balcony overlooking a body of water, surrounded by greenery.

A bar area with a long counter, multiple stools, and shelves stocked with bottles and glasses.

A building with a sign reading "GILLHOUSE" and a stone wall to the left.

A hotel room with two beds, a ceiling fan, wall-mounted lamps, and framed pictures.

1. The GillHouse

Henderson Harbor

James P

HK$883

HK$980 total

includes taxes & fees

15 Oct - 16 Oct

A four-poster bed with a canopy, a bedside table with a lamp, a chair, and a television on a stand.

A marina with multiple boats docked, surrounded by trees and a clear sky.

A hallway with a painting of a lighthouse, two upholstered chairs, a wooden console table with a vase of flowers, and a mirror on the wall.

A building with a flat roof and a parking lot in front.

2. Harbor House Inn

Sackets Harbor

Jeanne

HK$1,383

HK$1,611 total

includes taxes & fees

18 Oct - 19 Oct

A Holiday Inn Express building with a covered entrance, a landscaped garden, and a parking area.

A hotel room with a bed, a sitting area, a bathroom with a bathtub, and a desk with a lamp.

A modern breakfast bar with a coffee machine, cereal, and fruit options.

An indoor swimming pool with lounge chairs and a clock on the wall.

3. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

Bridget

HK$918

HK$1,019 total

includes taxes & fees

6 Nov - 7 Nov

A hotel lobby with a stone wall, green upholstered chairs, a round white table, and a beige sofa.

A modern dining area with multiple tables and chairs, pendant lighting, and artwork on the walls.

A multi-story hotel with a prominent entrance, a covered lobby area, and a well-lit facade.

A swimming pool with a changing room, sun loungers, and a hot tub area.

4. Fairfield Inn & Suites Watertown Thousand Islands

Watertown

Mark

HK$982

HK$1,090 total

includes taxes & fees

1 Nov - 2 Nov

A gazebo with a stone fire pit in the center, surrounded by outdoor seating and a brick pathway.

A hotel pool area with multiple hot tubs, a reception desk, and seating areas.

A spacious lobby with high ceilings, large windows, and modern furniture.

A spacious lobby with a patterned carpet, wooden beams, and a reception desk.

5. Hilton Garden Inn Watertown/Thousand Islands

Watertown

Suzanne

HK$1,062

HK$1,179 total

includes taxes & fees

17 Oct - 18 Oct

A Ramada hotel entrance with a clear sky, a red awning, and two potted plants.

A hotel room with a bed, a TV, a desk, and two lamps.

A gazebo with a white railing and a tiled roof, surrounded by grass and potted plants.

A lobby with a reception desk, seating area, and a large potted plant.

6. Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

Jiewu

HK$660

HK$733 total

includes taxes & fees

5 Nov - 6 Nov

A hotel lobby with a bar area, seating arrangements, and a television mounted on the wall.

A gym with treadmills, elliptical machines, and free weights.

A hotel room with a large bed, a desk with a lamp, a chair, and a view of the outdoors.

7. Hampton Inn Watertown

Watertown

Wanda

HK$766

HK$850 total

includes taxes & fees

29 Oct - 30 Oct

A hotel room with a large bed, a nightstand, a lamp, a chair, and a window with curtains.

An indoor swimming pool with clear blue water, lounge chairs, and a sunbed area.

A spacious lobby with a fireplace, blue armchairs, and a chandelier.

A Comfort Inn & Suites hotel with a modern design, featuring a central entrance, multiple floors, and a parking lot.

8. Comfort Inn & Suites Watertown - 1000 Islands

Watertown

Yandry

HK$747

HK$829 total

includes taxes & fees

5 Nov - 6 Nov

A sign with the text 'It only takes a spark' and a yellow star, a glass door leading to an interior space, and a yellow chair.

A modern interior with tables and chairs, a ceiling with recessed lighting, and a wall with abstract art.

A gym with various exercise machines, a television, and a green wall.

A hotel room with a bed, a television, a desk, and a window.

9. Spark by Hilton Watertown

Watertown

Dianne

HK$637

HK$707 total

includes taxes & fees

29 Oct - 30 Oct

A hotel room with a bed, a sofa, a desk, a lamp, a window with curtains, and a bathroom with a sink and mirror.

A lobby with a reception desk, a red vending machine, a black leather couch, and a patterned floor.

A vending machine with various snacks and drinks.

10. Travel Inn

Watertown

Trina

HK$530

HK$588 total

includes taxes & fees

1 Nov - 2 Nov

A hotel room with a bed, a bathroom with a bathtub, and a picture on the wall.

A pair of white front-loading washers in a laundry room with a tiled floor.

A breakfast area with wooden furniture, a coffee machine, and a sign that reads "Daybreak Breakfast".

A reception area with a Days Inn sign, two blue armchairs, a wooden reception desk, and a chandelier.

11. Days Inn by Wyndham Watertown Fort Drum

Calcium

Robert

HK$516

HK$572 total

includes taxes & fees

29 Oct - 30 Oct

An indoor swimming pool with clear water, surrounded by lounge chairs and tables, and large windows allowing natural light.

A building with a sign reading "Adirondack Efficiencies."

A hotel room with two beds, red walls, and a nightstand with a lamp.

A wooden desk with a flat-screen TV, a mirror, and a coffee maker.

12. Adirondack Efficiencies Watertown

Watertown

James

HK$549

HK$610 total

includes taxes & fees

1 Nov - 2 Nov

A modern living room with a flat-screen TV, comfortable seating, and a fireplace.

A reception area with a marble counter, pendant lighting, and a tiled floor.

A modern building with a covered entrance, multiple windows, and a parking lot.

A hotel room with a bed, a nightstand, a wall-mounted lamp, and a window with red curtains.

13. Quality Inn & Suites Watertown Fort Drum

Calcium

Sherry

HK$455

HK$505 total

includes taxes & fees

5 Nov - 6 Nov

A wooden deck with a table and chairs, overlooking a lake with boats and a dock.

A wooden dock extending into a body of water, a staircase leading to a house, and a covered outdoor area with an umbrella.

A spacious living area with a wooden floor, a sofa, a chair, and a dining table. There is a large window with a view of a snowy landscape.

A hallway with a white door, wooden flooring, and an archway leading to a dining area.

14. Family Cottage on Chaumont Bay, Walk to Downtown

Chaumont

HK$1,758

HK$3,550 total

includes taxes & fees

12 Oct - 13 Oct

A modern bedroom with a bed, bedside lamp, air conditioning unit, and a mounted TV displaying a streaming service interface.

A Nest Inn sign, a parking area, and a building with a red exterior.

A bathroom with a white sink, a modern faucet, and a blue soap dispenser.

A building with a red exterior and a covered parking area.

15. Nest Inn

Watertown

Harrison

HK$441

HK$533 total

includes taxes & fees

12 Oct - 13 Oct

A room with a bed, a chair, a table, and a lamp.

A bathroom with a bathtub, a shower, and a toilet.

A hotel room with two beds, a desk, a chair, a lamp, and a window with blinds.

A hotel room with a bed, a desk, a chair, and a small table.

16. Allen's Budget Motel

Watertown

Robert

HK$471

HK$523 total

includes taxes & fees

12 Oct - 13 Oct

A wooden exterior door with a glass panel, a stone step, and a metal doormat.

A hotel reception area with a white door, a reception desk, and a sign indicating the Royal Inn Office.

A hotel room with two beds, a nightstand with a lamp, and two framed pictures on the wall.

A building with a sign reading "ROYAL INN" and a car parked in front.

17. Royal Inn Motel

Watertown

Luz

HK$485

HK$538 total

includes taxes & fees

12 Oct - 13 Oct

A hotel room with two beds, a desk with a coffee maker, a TV, and a view of trees through the window.

A gym with treadmills, a weight machine, and a red exercise ball.

A kitchen with open shelves, a microwave, and a toaster.

A modern living room with a flat-screen TV, a wooden coffee table, a sofa, a bookshelf, and a patterned rug.

18. Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

Tara

HK$965

HK$1,071 total

includes taxes & fees

22 Oct - 23 Oct

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Stay near popular Henderson Harbor attractions

Saiff Charters

Lake Ontario comes alive with Saiff Charters' expert-guided salmon and trout fishing excursions. Experienced captains ensure a productive day on fully equipped boats while you enjoy lodging and meals.

See properties

Learn more about Henderson Harbor

Venture to sights like Lake Ontario and Saiff Charters as you discover Henderson Harbor.

See all hotels in Henderson Harbor

Top Henderson Harbor Hotel Reviews

Hampton Inn Watertown

10/10 Excellent

"Nicely appointed room with walk-in shower. Bed was very comfortable with a variety of pillows. Nice roomy desk for work. Breakfast was usual fare but clean and replenished often. Coffee bar was great! We were close to a variety of eateries/ gas stations and close access to Rte 87. We will definitely stay here again."

Ramada by Wyndham Watertown/Thousand Islands NY

10/10 Excellent

"great location and great customer service, property could use a update, but had a very nice stay,staff was great"

Fairfield Inn & Suites Watertown Thousand Islands

8/10 Good

"The room is clean and spacious. The front desk staff are attentive and take good care of the customers."

Hilton Garden Inn Watertown/Thousand Islands

10/10 Excellent

"Clean, comfy and the staff were very helpful. I would definitely recommend this place."

Quality Inn & Suites Watertown Fort Drum

8/10 Good

"Very nice place and nice staff!"

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

10/10 Excellent

"The shower was awesome and I hated to get out. Loved there were ladies watching and cleaning the breakfast area. The room just felt so much better than other hotels I've stayed at."

Royal Inn Motel

10/10 Excellent

"Nice place, clean and very quiet. I would definitely book again"

The GillHouse

10/10 Excellent

"Great place, will definitely stay here again!"

Comfort Inn & Suites Watertown - 1000 Islands

10/10 Excellent

"Overall a decent hotel Had to unplug fridge as it was making noise trying to sleep Great location for heading up to 1000 Islands"

More cheap stays in Henderson Harbor

Quality Inn & Suites Watertown Fort Drum

8000 Virginia Smith Drive Calcium NY

HK$455

HK$505 total

5 Nov - 6 Nov

includes taxes & fees

8.2/10 Very good! (1,002 reviews)

Days Inn by Wyndham Watertown Fort Drum

25940 US Route 11 Calcium NY

HK$516

HK$572 total

29 Oct - 30 Oct

includes taxes & fees

Travel Inn

1190 Arsenal St Watertown NY

HK$530

HK$588 total

1 Nov - 2 Nov

includes taxes & fees

Ramada by Wyndham Watertown/Thousand Islands NY

21000 NY State Rt 3 Watertown NY

HK$660

HK$733 total

5 Nov - 6 Nov

includes taxes & fees

Comfort Inn & Suites Watertown - 1000 Islands

110 Commerce Park Drive Watertown NY

HK$747

HK$829 total

5 Nov - 6 Nov

includes taxes & fees

8.6/10 Excellent! (1,028 reviews)

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

1290 Arsenal St Watertown NY

HK$918

HK$1,019 total

6 Nov - 7 Nov

includes taxes & fees

9.2/10 Wonderful! (1,000 reviews)

Frequently asked questions

Where is the best place for a stay in Henderson Harbor?

Based on our traveller data, The GillHouse is one of the top choices for your stay. This hotel is a short 1-minute walk from Lake Ontario, and it offers a restaurant and free parking. Other good options for your stay in the area are Ramada by Wyndham Watertown/Thousand Islands NY and Comfort Inn & Suites Watertown - 1000 Islands. See all available top hotels, or vacation rentals in Henderson Harbor.

What are some of the best holiday rentals that Henderson Harbor has to offer?

Lake Ontario Waterfront @ Pillar Point | Boat Ramp, Fire Pit, Kayaks & Game Room: This holiday home rental outside of Henderson Harbor is located on the beach, and has a balcony, a garden and a BBQ to put you at ease in your new surroundings. It has 6 bedrooms, as well as a kitchen with a dishwasher, a fridge and a stovetop, so that you can cook with friends or family. Make the most of games in this rental home to help you unwind. See all vacation rentals in Henderson Harbor.

If I need to cancel my hotel reservation in Henderson Harbor, will I receive a refund?

Yes! Most hotel bookings are refundable provided that you cancel before the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you have a non-refundable reservation, you might be able to cancel it and be given a refund within a 24-hour period of booking. Filter your search by fully refundable to find flexible hotel deals in Henderson Harbor.

What's the best dog-friendly accommodation option in Henderson Harbor?

The GillHouse is a top dog-friendly hotel, and offers a restaurant and a bar/lounge for its human guests. See more pet-friendly hotel accommodations in Henderson Harbor.

What are some accommodation options with pools in Henderson Harbor?

Ramada by Wyndham Watertown/Thousand Islands NY: Features daily, a seasonal outdoor pool and free self parking. Comfort Inn & Suites Watertown - 1000 Islands and Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG are a couple of other choices that offer an on-site pool. View all hotels with pools in Henderson Harbor.

How is it to stay in Henderson Harbor?

Those travelling to Henderson Harbor will definitely enjoy the sights to see and things to do. In Henderson Harbor, there are 5 hotels and other accommodation options to choose from. Find out more about Henderson Harbor.

What should I see while I'm in Henderson Harbor?

A couple of favourite places to visit are Lake Ontario and Saiff Charters. You'll also find Westcott Beach State Park and Southwick Beach State Park in the area. Take a look at what more there is to see and do in Expedia's Henderson Harbor guide.

What's the seasonal weather in Henderson Harbor?

The hottest months are usually July and August, with an average temperature of 19°C, while the coldest months are January and February, with an average of -3°C. The snowiest months in Henderson Harbor are January, February, March and November, with each month seeing an average of 47 cm of snowfall.

Henderson Harbor hotels from HK$505

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Henderson Harbor

Check prices for these dates

Filter by

Star rating

Guest rating

Our top choices for Henderson Harbor hotels

1. The GillHouse

2. Harbor House Inn

3. Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

4. Fairfield Inn & Suites Watertown Thousand Islands

5. Hilton Garden Inn Watertown/Thousand Islands

6. Ramada by Wyndham Watertown/Thousand Islands NY

7. Hampton Inn Watertown

8. Comfort Inn & Suites Watertown - 1000 Islands

9. Spark by Hilton Watertown

10. Travel Inn

11. Days Inn by Wyndham Watertown Fort Drum

12. Adirondack Efficiencies Watertown

13. Quality Inn & Suites Watertown Fort Drum

14. Family Cottage on Chaumont Bay, Walk to Downtown

15. Nest Inn

16. Allen's Budget Motel

17. Royal Inn Motel

18. Candlewood Suites Watertown Fort Drum by IHG

Stay near popular Henderson Harbor attractions

Saiff Charters

Learn more about Henderson Harbor

Top Henderson Harbor Hotel Reviews

Hampton Inn Watertown

Ramada by Wyndham Watertown/Thousand Islands NY

Fairfield Inn & Suites Watertown Thousand Islands

Hilton Garden Inn Watertown/Thousand Islands

Quality Inn & Suites Watertown Fort Drum

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Royal Inn Motel

The GillHouse

Comfort Inn & Suites Watertown - 1000 Islands

More cheap stays in Henderson Harbor

Quality Inn & Suites Watertown Fort Drum

Days Inn by Wyndham Watertown Fort Drum

Travel Inn

Ramada by Wyndham Watertown/Thousand Islands NY

Comfort Inn & Suites Watertown - 1000 Islands

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app