A sunny beach with people sunbathing and swimming, palm trees, and buildings in the background.

San Diego Mission Bay Hotels

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

Tonight
19 Aug - 20 Aug
Tomorrow
20 Aug - 21 Aug
This weekend
21 Aug - 23 Aug
Next weekend
28 Aug - 30 Aug

Filter by

Star rating

Guest rating

Our top choices for Mission Bay hotels

1. The Wayfarer San Diego

The Wayfarer San Diego
Mission Beach, 3 km from Mission Bay
United States
Brittney
HK$2,089
HK$2,401 total
includes taxes & fees
2 Sept - 3 Sept
The Wayfarer San Diego

2. ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
Central Mission Beach, 2.4 km from Mission Bay
Canada
Julien
HK$1,088
HK$1,227 total
includes taxes & fees
2 Sept - 3 Sept
ITH Mission Beach Backpacker Hostel

3. Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
Mission Beach, 2.4 km from Mission Bay
United States
Kimberly
HK$1,920
HK$2,165 total
includes taxes & fees
31 Aug - 1 Sept
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

4. Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.2 km from Mission Bay
United States
Magdalena
HK$1,151
HK$1,323 total
includes taxes & fees
31 Aug - 1 Sept
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

5. The Beach Cottages

The Beach Cottages
Pacific Beach, 3.2 km from Mission Bay
United States
Samuel
HK$1,370
HK$1,575 total
includes taxes & fees
2 Sept - 3 Sept
The Beach Cottages

6. The Dana on Mission Bay

The Dana on Mission Bay
Mission Bay, 1.6 km from Mission Bay
United States
elizabeth
HK$1,260
HK$1,673 total
includes taxes & fees
2 Sept - 3 Sept
The Dana on Mission Bay

7. Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
Pacific Beach, 2.9 km from Mission Bay
United States
hannah
HK$981
HK$1,128 total
includes taxes & fees
7 Sept - 8 Sept
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

8. Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 km from Mission Bay
United States
Xiaotong
HK$1,059
HK$1,217 total
includes taxes & fees
30 Aug - 31 Aug
Holiday Inn Express San Diego - SeaWorld Area by IHG

9. Paradise Point Resort & Spa

Paradise Point Resort & Spa
Mission Bay, 1.3 km from Mission Bay
United States
Jared
HK$1,751
HK$2,427 total
includes taxes & fees
7 Sept - 8 Sept
Paradise Point Resort & Spa

10. Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.2 km from Mission Bay
United States
Lolita
HK$900
HK$1,034 total
includes taxes & fees
13 Sept - 14 Sept
Comfort Inn Sea World Area

11. San Diego Mission Bay Resort

San Diego Mission Bay Resort
Mission Bay, 1.5 km from Mission Bay
United States
Maria
HK$1,535
HK$2,299 total
includes taxes & fees
7 Sept - 8 Sept
San Diego Mission Bay Resort

12. Catamaran Resort and Spa

Catamaran Resort and Spa
Mission Beach, 2.9 km from Mission Bay
United States
Ashley
HK$1,659
HK$2,324 total
includes taxes & fees
2 Sept - 3 Sept
Catamaran Resort and Spa

13. Bahia Resort Hotel

Bahia Resort Hotel
Central Mission Beach, 2 km from Mission Bay
United States
Cristina
HK$1,562
HK$2,230 total
includes taxes & fees
20 Sept - 21 Sept
Bahia Resort Hotel

14. Hyatt Regency Mission Bay Spa and Marina

Hyatt Regency Mission Bay Spa and Marina
Mission Bay, 1.9 km from Mission Bay
United States
Casey
HK$1,560
HK$2,208 total
includes taxes & fees
2 Sept - 3 Sept
Hyatt Regency Mission Bay Spa and Marina

15. Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 km from Mission Bay
United States
Sarriah
HK$1,012
HK$1,163 total
includes taxes & fees
23 Aug - 24 Aug
Best Western San Diego Pacific Beach/Mission Bay

16. GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
Pacific Beach, 3 km from Mission Bay
United States
Alma
HK$795
HK$914 total
includes taxes & fees
23 Aug - 24 Aug
GreenTree Inn San Diego Mission Bay

17. Surfer Beach Hotel

Surfer Beach Hotel
Pacific Beach, 3 km from Mission Bay
Canada
Erica
HK$1,521
HK$1,717 total
includes taxes & fees
8 Sept - 9 Sept
Surfer Beach Hotel

18. ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
Pacific Beach, 3.2 km from Mission Bay
United States
angelea
HK$899
HK$1,014 total
includes taxes & fees
15 Sept - 16 Sept
ITH Beach Bungalow Surf Hostel

19. Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
2.8 km from Mission Bay
United States
marissa
HK$961
HK$1,104 total
includes taxes & fees
2 Sept - 3 Sept
Wyndham Garden San Diego Near SeaWorld

20. Heritage Inn San Diego

Heritage Inn San Diego
2.5 km from Mission Bay
United States
Ivan
HK$525
HK$604 total
includes taxes & fees
3 Sept - 4 Sept
Heritage Inn San Diego
View all properties

Compare popular hotels close to Mission Bay

Property
Property class
Guest rating
Breakfast included
Pool
Spa
Pet-friendly
WiFi included
A pool area with lounge chairs and a hot tub, overlooking the ocean.
The Wayfarer San Diego
9.4
Exceptional
1,845 reviews
View
A coastal cityscape with buildings along the beach, waves in the foreground, and a clear sky.
ITH Mission Beach Backpacker Hostel
9.4
Exceptional
225 reviews
View
A modern architectural entrance with a central archway, illuminated by wall-mounted lights, flanked by planters with cacti, and a pathway leading through the arch.
Boardwalk Hotel: Bikes, Boards & Beach Gear Included
9.4
Exceptional
441 reviews
View
A modern building with multiple windows, outdoor seating, and a chessboard.
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
9.2
Wonderful
1,235 reviews
View
A beach view with a palm tree, a covered area with people, and a building with a sloped roof.
The Beach Cottages
9.2
Wonderful
1,000 reviews
View

Top Mission Bay Hotel Reviews

Comfort Inn Sea World Area

Comfort Inn Sea World Area

8/10 Good
"Necesita arreglar las regaderas hacen ruidos muy extraños como mucho aire"
Elvia 1-night trip
Posted 1 hour ago
Comfort Inn Sea World Area
The Wayfarer San Diego

The Wayfarer San Diego

8/10 Good
"The staff was very professional and quite helpful. They were all courteous and accommodating. Just a good group."
Rudolf 2-night trip
Posted 2 hours ago
The Wayfarer San Diego
Paradise Point Resort & Spa

Paradise Point Resort & Spa

8/10 Good
"This hote"
Andrea 2-night trip
Posted 5 hours ago
Paradise Point Resort & Spa
Crowne Plaza San Diego - Mission Valley by IHG

Crowne Plaza San Diego - Mission Valley by IHG

10/10 Excellent
"I loved the fountains, tropical foliage, waterfalls, and little ponds."
Donna 1-night trip
Posted 5 hours ago
Crowne Plaza San Diego - Mission Valley by IHG
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

8/10 Good
"We really enjoyed our stay overall. The hotel was comfortable, clean, and we had a very pleasant experience. There were just two things I didn’t particularly like. Breakfast is only served from 6:00 to 9:00 AM, which feels a little early when you’re on vacation and would like to sleep in. The biggest downside for me was the $20 per night parking fee. The hotel has plenty of parking spaces on its own property, so I don’t really understand why guests have to pay an additional fee just to park their car. In my opinion, parking should be included for hotel guests. Other than that, we enjoyed our stay and were happy with the hotel."
Olga 5-night trip
Posted 7 hours ago
Best Western Inn & Suites San Diego – Zoo/SeaWorld Area
Bahia Resort Hotel

Bahia Resort Hotel

10/10 Excellent
"I had a very nice stay at the Bahia Resort Hotel and would definitely recommend it. The property itself is beautiful, and I really appreciated the free parking. I stayed in a garden-view room, which was clean, comfortable, and well kept. The staff throughout the resort were also very friendly, helpful, and welcoming. I especially appreciated how helpful Guest Services was. I needed to print a document during my stay, and all I had to do was email it to them. They printed it for me right away at no additional charge. There were a couple of unexpected inconveniences during my stay, but neither would prevent me from returning. Both restaurants had unfortunately run out of pastries, so gelato was pretty much the only dessert option available. The second happened in the middle of the night, at around 3:10 a.m., when the battery on the fire alarm ran out and the alarm became quite loud. However, I understand that things like this happen and are outside of the hotel’s control. I really appreciated how quickly they had security respond and take care of the issue. Overall, everything was great. The property is beautiful, and the beach looked especially nice at night. I arrived later in the evening and left the following morning, so I didn’t have a chance to enjoy the pool area or many of the other amenities the resort has to offer. Even though my stay was short, it was a very pleasant experience, and I would definitely consider staying here again."
Mireya 1-night trip
Posted 11 hours ago
Bahia Resort Hotel
The Dana on Mission Bay

The Dana on Mission Bay

10/10 Excellent
"Loved our stay here!"
elizabeth 2-night trip
Posted 1 day ago
The Dana on Mission Bay
GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay

10/10 Excellent
"Nice older hotel. Breakfast was really good, and the breakfast room is nice. Close to restaurants and shopping. I will be happy to stay here again"
Marsha 2-night trip
Posted 1 day ago
GreenTree Inn San Diego Mission Bay
Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG

10/10 Excellent
"Grate"
Alpesh 4-night trip
Posted 2 days ago
Holiday Inn Express San Diego - SeaWorld Area by IHG

Other attractions near Mission Bay

Ski Beach

Why not spend a lazy afternoon at Ski Beach during your trip to San Diego?
See properties

beach near Mission Bay

Why not spend a lazy afternoon at beach near Mission Bay during your trip to San Diego?
See properties

beach near Mission Bay Park

Why not spend a lazy afternoon at beach near Mission Bay Park during your trip to San Diego?
See properties

Crown Point Shores

Why not spend a lazy afternoon at Crown Point Shores during your trip to San Diego? Discover the beautiful sunsets in this walkable area or enjoy its surfing spots.
See properties

North Cove Beach

Why not spend a lazy afternoon at North Cove Beach during your trip to San Diego?
See properties

The Dana On Mission Bay, BW Premier Collection

After visiting The Dana On Mission Bay, BW Premier Collection, make a plan to see the other sights and activities in San Diego.
See properties

Bahia Point Beach

Why not spend a lazy afternoon at Bahia Point Beach during your trip to San Diego?
See properties

Marina Village Conference Center

Learn about the events happening in Marina Village Conference Center during your trip to San Diego.
See properties

Find out more about Mission Bay

Top reasons to visit Mission Bay

  • Stunning Beaches: Mission Bay features beautiful sandy shores, perfect for sunbathing and relaxation.
  • Outdoor Activities: Enjoy a variety of activities such as tennis, dolphin encounters, and whale watching.
  • Family-Friendly Attractions: The area offers budget-friendly options and charming resorts, making it ideal for families.
  • Vibrant Atmosphere: Explore the lively Mission Beach and the picturesque waterfront of Mission Bay Park.
  • Diverse Accommodation: Choose from a range of hotels and apartments to suit every traveller's needs.

Find great hotels near Mission Bay

Mission Bay offers a diverse selection of accommodation options, from hotels to apartments, ensuring a perfect fit for every traveller. Whether you seek a family-friendly resort or a pet-friendly retreat, you'll find hotels that cater to adventure seekers and those simply wanting to relax. With its stunning waterfront views and proximity to attractions, Mission Bay is an ideal destination for your next getaway in San Diego.

  • Days Inn by Wyndham San Diego Hotel Circle: Nestled 6km away from the vibrant Mission Bay, this 3-star hotel is ideal for adventurous travellers and those on business. With a guest rating of 8.0 out of 10, the Days Inn offers a pet-friendly atmosphere, catering to those travelling with furry companions. Guests can engage in a variety of adventure sports nearby, including snorkelling, windsurfing, kayaking, and more. The hotel features essential amenities for a comfortable stay, ensuring both leisure and convenience.
  • Best Western Seven Seas: Located 6km from Mission Bay, the Best Western Seven Seas is a family-friendly, 3-star accommodation that promises a blend of adventure and comfort. This hotel is well-suited for families and business travellers alike, providing easy access to outdoor activities such as mountain biking, waterskiing, and sailing. Children are well catered for with complimentary cribs and facilities designed for younger guests, making it a welcoming option for families visiting the area.
  • Paradise Point Resort & Spa: Just 1km from Mission Bay, the 4-star Paradise Point Resort & Spa offers a tranquil beachside retreat perfect for those seeking a sunny escape. With a commendable guest rating of 8.8 out of 10, this resort features direct access to the beach, allowing guests to indulge in the beauty of the coastline. The resort's serene environment, coupled with luxurious amenities, makes it an excellent choice for a relaxing getaway by the sea.

Where to stay near Mission Bay

Mission Bay in San Diego offers a delightful blend of family-friendly attractions and picturesque scenery. Explore the vibrant Mission Beach, where friendly locals welcome visitors with open arms. The area boasts budget-friendly options alongside charming beach resorts, making it perfect for families. Stroll along the bay’s stunning waterfront, and immerse yourself in the rich history and relaxed atmosphere that surrounds this beautiful destination.

  • San Diego: As a vibrant city, San Diego is the heart of the region, encompassing Mission Bay and offering an abundance of attractions. This city boasts a mild climate year-round, making it a haven for families seeking outdoor activities and beach experiences. From educational venues to bustling shopping centres and luxurious resorts, there’s something for everyone. San Diego is particularly famous for its stunning beaches, thrilling theme parks, and family-friendly environments, ensuring a memorable visit for tourists of all ages. The peak travel seasons from March to April and July invite a lively atmosphere, perfect for those looking to soak up the sun and local culture.
  • Pacific Beach: Located a mere 3km from Mission Bay, Pacific Beach is a lively neighbourhood known for its youthful energy and beachside charm. Visitors flock here for outdoor adventures, family-friendly activities, and the beautiful sandy shores. The iconic boardwalk is perfect for leisurely strolls, cycling, or rollerblading, while nearby shopping centres cater to all your retail needs. With peak travel periods in April and June to July, Pacific Beach offers a laid-back yet vibrant atmosphere, making it a perfect getaway for families looking to relax and enjoy the scenic coastal views.
  • Mission Beach: Just 3km from Mission Bay, Mission Beach is a delightful neighbourhood that embodies the quintessential Californian beach lifestyle. Known for its picturesque boardwalk and proximity to an amusement park, it’s an ideal spot for families seeking both relaxation and excitement. The beach itself is a haven for sunbathers and water sports enthusiasts, with vibrant local eateries adding to the charm. While visitor numbers peak in March and July to August, the area maintains a welcoming atmosphere throughout the year, making it an excellent choice for those wanting to enjoy a quintessential beach experience.

Things to do near Mission Bay

Shopping

For a delightful shopping experience, explore the local shops along Mission Boulevard, where you can find unique souvenirs and beachwear. If you're up for a drive, Fashion Valley Mall offers a range of high-end brands and dining options, located about 19km away.

Recreation

Ocean Wellness Spa offers a tranquil environment with ocean views, featuring rejuvenating treatments like massages and facials. For outdoor relaxation, visit Mission Bay Park, where you can enjoy yoga sessions on the beach, paddleboarding, and serene walks along the waterfront, all immersed in nature's beauty.

Adventure

Barona Speedway offers thrilling motor racing experiences located 43km from Mission Bay. Feel the adrenaline rush as you watch high-speed races and immerse yourself in the vibrant sports atmosphere, surrounded by fellow enthusiasts and the excitement of the track.

Nightlife

Explore the vibrant nightlife at The Catamaran Resort Hotel and Spa, where you can sip tropical cocktails by the beach. For a lively atmosphere, visit the Mission Beach Boardwalk, featuring various bars and live entertainment options that capture the spirit of San Diego's coastal charm.

*Distances are measured in a straight line; actual driving distances may vary depending on the route.

Booking tips and Expedia advantages for Mission Bay

To save money on your visit to Mission Bay, plan your trip between November and January, when accommodation prices are lower, and aim to book your stay on a Tuesday for the best rates. Utilise Expedia's search tool to find budget-friendly hotels and consider eco-certified options for added savings. Combining your hotel, flights, and activities into a package can further reduce costs. For transportation, explore the area on foot or use public transport to keep expenses down, as many attractions are easily accessible.

  • The most and least expensive months on average to stay in a hotel: The cheapest months to stay around Mission Bay are November to January, where the prices are slightly lower. This is in comparison to June to August, where prices are slightly higher.
  • The most and least expensive days on average to stay in a hotel: The least expensive day to stay around Mission Bay is Tuesday. The most expensive day to stay around Mission Bay is Saturday.
  • Find cheap hotels on Expedia: Expedia’s search tool enables you to specify your budget, preferred location, and additional criteria. You have the option to sort the results by price, allowing you to view the most affordable hotels first. Furthermore, you can refine your search by hotel type; for instance, selecting the Eco-certified filter will showcase sustainable and environmentally-friendly hotels that are available for booking.
  • Consider bundling your trip: You can potentially reduce your expenses by combining your hotel reservations in Mission Bay with your flights and activities through an Expedia package.

Find the best attractions near Mission Bay

Mission Bay, San Diego, offers a delightful blend of attractions, perfect for those seeking culture, outdoor adventures, and family experiences. Visitors can explore stunning beaches, vibrant urban parks, and the intriguing maritime museum. Don't miss the picturesque views of Mission Bay and the nearby San Diego Bay, as well as the lively atmosphere at Pacific Beach and Mission Bay Park, all providing ample opportunities for relaxation and exploration.

  • Mission Beach: Experience the quintessential Californian beach vibe at Mission Beach, located a mere 3km from Mission Bay. Enjoy sun-soaked sandy shores, vibrant boardwalks, and an array of water sports, making it an ideal spot for relaxation and recreation.
  • Hotel Circle: Just 6km from Mission Bay, Hotel Circle offers a lively city atmosphere, lined with a variety of hotels, restaurants, and entertainment options. This convenient location serves as a perfect base for exploring San Diego’s attractions.
  • USS Midway Museum: Situated 8km away, the USS Midway Museum provides a unique glimpse into maritime history. Explore the historic aircraft carrier and its fascinating exhibits, immersing yourself in naval culture and the stories of those who served.

The nearest major airports for your trip to Mission Bay

Accessing Mission Bay, SAN Diego is convenient with the nearby San Diego International Airport (SAN), located 6km away. Excellent hotel options in the vicinity include the 5-star Pendry San Diego, 5km from the airport, and The US Grant, also a 5-star establishment, just 3km away. Both hotels offer easy access to the airport. For those considering further options, John Wayne Airport (SNA) is located 116km from Mission Bay, with the luxurious Resort at Pelican Hill 10km away, and Balboa Bay Resort, 8km away. Lastly, ONTario International Airport (ONT) is 146km distant, with DoubleTree by Hilton Ontario Airport being a convenient choice, just 2km away.

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Whaley House Museum, Maritime Museum of San Diego or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, SOMA - San Diego and NTC Promenade.

Explore a world of travel with Expedia