Best San Juan Islands Hotels in 2026 from HK$843 - Fully Refundable Options

A lighthouse on a rocky coastline with the ocean in the foreground.

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Go beyond your typical stay in San Juan Islands

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Our top choices for San Juan Islands hotels

A living room with a sofa, armchairs, a coffee table, and a fireplace.

A landscaped garden with neatly trimmed hedges, a white picket fence, and a wooden signboard.

A waterfront promenade with benches, a gazebo, and a large white boat docked at a pier.

A building with a sign that reads "OFFICE Gift Shop" at the entrance.

1. Earthbox Inn & Spa

Friday Harbor

Amy

HK$1,804

HK$1,996 total

includes taxes & fees

4 Oct - 5 Oct

A lakeside view with a wooden deck and chairs, a covered area with columns, and a calm lake with distant hills.

A spacious living area with a fireplace, a dining table with chairs, and a kitchen in the background.

A marina with boats, a stone bridge, and a well-maintained grassy area.

A coastal property with a circular building, rocky shoreline, clear water, and a forested hill in the background.

2. Rosario Resort

Eastsound

David

HK$1,096

HK$1,405 total

includes taxes & fees

27 Sept - 28 Sept

A wooden pier leading to a building with large windows and a flagpole.

A wooden interior with a bench, tables, and a staircase leading to the hotel office.

A restaurant with stone walls, wooden tables, and chairs. There are large windows allowing natural light.

A wooden boardwalk leading to a building with multiple windows and lights.

3. Lopez Islander Resort

Lopez Island

Diane

HK$1,404

HK$1,549 total

includes taxes & fees

4 Oct - 5 Oct

Two people relaxing by a fire pit with a view of a harbor and a large ship.

A couple in white bathrobes sitting on a bed with a textured headboard, two wall-mounted lamps, and a decorative wall piece.

A bar area with shelves of bottles and glasses, a counter with a fruit bowl, and tables with chairs.

A coastal town at dusk with a marina, boats, and a large cruise ship docked.

4. Friday Harbor House

Friday Harbor

Robert

HK$2,851

HK$3,155 total

includes taxes & fees

14 Oct - 15 Oct

A building with a covered outdoor area, red doors, and hanging flower baskets.

A two-story building with a balcony, surrounded by a well-maintained garden with various plants and flowers.

A pool area with a wooden deck, surrounded by trees with pinkish leaves.

A hotel room with a grey armchair, a small round table, a bedside table, a lamp, and a potted plant.

5. Discovery Inn

Friday Harbor

Robert

HK$1,334

HK$1,476 total

includes taxes & fees

2 Oct - 3 Oct

A serene outdoor seating area with a table and chairs, surrounded by lush greenery and a tree.

A grassy area with a pond, trees, and a red chair.

A two-story building with a red door, surrounded by a garden with various plants and flowers.

A dining table set with plates of food, glasses, and a vase of flowers.

6. Trumpeter Inn

Friday Harbor

James

HK$1,803

HK$1,990 total

includes taxes & fees

4 Oct - 5 Oct

A modern interior with sofas, a table, and hanging plants.

A living room with a stone fireplace, a large window, a dark gray sofa, and a wooden coffee table.

A covered outdoor swimming pool area with a hot tub, benches, and emergency exit signs.

A modern interior with a stone fireplace, hanging lamps, and a sign indicating the property is for sale.

7. Friday Harbor Suites

Friday Harbor

Jennifer

HK$1,490

HK$1,649 total

includes taxes & fees

4 Oct - 5 Oct

A large, two-story house with a well-maintained lawn and a brick pathway leading to the front door.

A garden with pink roses and purple flowers, a white fence, and a pergola.

A wooden deck with a round table and chairs, a sofa, and a view of a sunset over a landscape.

A living room with a fireplace, leather sofa, and a large painting above the fireplace.

8. The Edenwild Boutique Inn

Lopez Island

Frances

HK$1,064

HK$1,174 total

includes taxes & fees

7 Oct - 8 Oct

A motel with a row of rooms, a parking lot, and blooming flowers in the foreground.

A wooden chair and a wooden dresser in a room with a wooden panel wall.

A room with two beds, wooden walls, and a window.

A hallway with an exit sign, a statue, and a Starbucks sign on the wall.

9. The Orca Inn

Friday Harbor

Andrew

HK$762

HK$843 total

includes taxes & fees

4 Oct - 5 Oct

An aerial view of a coastal marina with boats docked, surrounded by lush greenery and residential areas.

A wooden porch with two cushioned chairs, a hanging flower pot, and a sign thanking the carpenter family.

A cozy room with a fireplace, a television, a dining area, and a sofa with a view of greenery.

An aerial view of a residential area with houses, a large body of water, and a forested landscape.

10. Deer Harbor Inn

Deer Harbor

Nemo

HK$1,590

HK$1,755 total

includes taxes & fees

25 Oct - 26 Oct

A waterfront property with multiple buildings, including a large house with a prominent roof and a smaller structure with a chimney.

A hotel room with a bed, a TV mounted on the wall, a desk with a chair, and a large window offering a view of the sea and mountains.

A child walking on a gravel path towards a rustic wooden cabin surrounded by lush greenery and flowering plants.

A modern building with a stone foundation and large windows, surrounded by a white fence and greenery.

11. Outlook Inn

Eastsound

Corey

HK$2,522

HK$2,900 total

includes taxes & fees

4 Oct - 5 Oct

A two-story house with a front porch, a picket fence, and a small garden area.

A balcony with a hot tub, two chairs, and a table set with plates, glasses, and a bottle.

A garden with a wooden pergola, flowering plants, and a pathway leading to a house.

A conservatory with a dining table set for four, surrounded by white chairs, and a lamp on the right.

12. Tucker House Inn

Friday Harbor

ZACHARY

HK$1,130

HK$1,251 total

includes taxes & fees

1 Oct - 2 Oct

A marina with boats docked in a structured layout, surrounded by water and a distant cityscape.

A restaurant with tables set for dining, large windows offering a view of boats and greenery.

A serene lakeside setting with string lights, wicker chairs, and a fire pit area.

A waterfront hotel with multiple docked boats, a pier, and a view of the surrounding forested area.

13. Roche Harbor Resort

Friday Harbor

Nicco

HK$1,680

HK$1,947 total

includes taxes & fees

12 Oct - 13 Oct

A marina with boats, a cruise ship, and a forested island.

A kitchen with wooden cabinets, a built-in microwave, and a coffee station.

A hotel room with a bed, a TV, a painting, a wooden dresser, and a desk with a lamp.

A living room with a sectional sofa, a coffee table, a lamp, and a potted plant.

14. Bird Rock Hotel

Friday Harbor

Vanessa

HK$1,255

HK$1,388 total

includes taxes & fees

4 Oct - 5 Oct

A wooden cabin interior with a dining table, chairs, and a bench.

A cozy cabin interior with a large window overlooking a lake, a fireplace, and a comfortable seating area.

A lodge with multiple cabins, a dock, and a surrounding forest.

A marina with boats docked, surrounded by forested hills and a small building complex.

15. Snug Harbor Resort

Friday Harbor

Patricia

HK$1,953

HK$2,155 total

includes taxes & fees

18 Oct - 19 Oct

A two-story building with a covered porch, surrounded by a variety of flowering plants.

A living room with a grand piano, a fireplace, a sofa, and a chair.

A dining room with a large wooden table surrounded by chairs, a patterned rug, and a cabinet with a mirror.

A man seated at a piano with sheet music, surrounded by books and a vase of flowers.

16. Friday Harbor Grand B&B

Friday Harbor

Andrew

HK$2,191

HK$2,424 total

includes taxes & fees

11 Oct - 12 Oct

A wooden deck with a railing, potted plants, and hanging flower baskets.

A cozy room with a wooden bench, a chair, a small table with a lamp, and a stained glass window with a plant on the windowsill.

A dining area with a wooden table and chairs, a patterned rug, and a painting on the wall.

A house with a red exterior, a front porch, and a staircase leading to the entrance.

17. Kangaroo House B&B on Orcas Island

Eastsound

Ashlee

HK$1,762

HK$1,944 total

includes taxes & fees

25 Oct - 26 Oct

A wooden deck with a table and grill, overlooking a lake with a distant bridge.

A wooden deck with two green umbrellas, a wooden pier extending into calm water, and a view of distant land.

A wooden cabin with a dining area and a patio overlooking a rocky shoreline.

A wooden cabin room with a large bed, a window with a view of the sea, and a framed picture on the wall.

18. West Beach Resort

Eastsound

lorrie

HK$1,655

HK$1,826 total

includes taxes & fees

12 Oct - 13 Oct

A room with a sloped ceiling and large windows offering a view of a rural landscape.

An outdoor event with people seated at tables under string lights and paper lanterns.

A table with various food items, including a dish with green beans, eggs, and a bowl of sauce.

A farm with rows of crops under a partly cloudy sky.

19. Saturn's Return

Friday Harbor

Margaret

HK$2,668

HK$2,944 total

includes taxes & fees

5 Oct - 6 Oct

A two-story house with a red roof and white exterior, featuring a front porch with red chairs and a small tree.

A spacious living area with a fireplace, patterned furniture, and large windows.

A house with a red roof, surrounded by lush greenery and mountains in the background.

A bar area with wooden stools, a bar counter, and shelves stocked with bottles.

20. Anacortes Ship Harbor Inn

Anacortes

Traci

HK$769

HK$853 total

includes taxes & fees

4 Oct - 5 Oct

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Stay near popular San Juan Islands attractions

Lime Kiln Point State Park

9.6/10 (317 reviews)

Witness orcas swimming along the rocky shoreline at this premier land-based whale-watching park. The historic 1919 lighthouse offers spectacular views of Haro Strait, especially from May through September.

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A boat rental station on a calm lake surrounded by forested hills.

Cascade Lake

9.2/10 (20 reviews)

Relax on the beach of this picturesque lake, swim and kayak in the calm water and follow hiking trails to viewpoints and a waterfall.

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A lighthouse on a rocky cliff by the sea.

San Juan Island National Historic Park

9.4/10 (184 reviews)

This historical park commemorates the peaceful resolution of the 1859 "Pig War" boundary dispute between the US and Britain. Explore American and English Camps while watching for orcas and eagles.

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People preparing kayaks on a riverbank with a small office and a red-roofed building in the background.

San Juan County Park

9.0/10 (87 reviews)

This coastal sanctuary offers prime orca-watching from its rocky shores overlooking Haro Strait. Bring binoculars to spot passing whales while exploring tide pools along the peaceful gravel beaches.

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Orcas Island Artworks

10.0/10 (2 reviews)

You can spend time exploring the galleries in Orcas Island Artworks during your trip to Olga. Wander the forests and lakeside while you're in the area.

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Doe Bay Hot Springs

9.2/10 (5 reviews)

You can take time to visit Doe Bay Hot Springs during your travels to Doe Bay. Wander the waterfront or discover the area's sunsets.

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Orcas Island Historical Museum

9.2/10 (20 reviews)

Six original homestead cabins from the 1800s form this unique museum chronicling Orcas Island's rich history. Explore pioneer life through artefacts displayed in authentic historical structures.

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Learn more about San Juan Islands

Kayaking between forested islands reveals hidden coves and curious seals, while orcas breach offshore during whale-watching tours. Hike Mount Constitution on Orcas Island for sweeping views, then explore Friday Harbor's galleries and savour fresh-caught seafood at waterfront restaurants.

See all hotels in San Juan Islands

Top San Juan Islands Hotel Reviews

The Orca Inn

8/10 Good

"Great place in the perfect location while attending a nearby wedding. In my process range, no complaints."

Discovery Inn

10/10 Excellent

"Beautiful room, excellent place"

Inn to the Woods B&B

10/10 Excellent

"It's a very charming property. My bed was very comfortable, and I had a private hot tub on the patio with a view of Egg Lake! Breakfast was delicious and thoughtful. There are two adorable dogs on the property which made me very happy!"

Rosario Resort

8/10 Good

"This property is in a very nice location. We missed the sign on the main road and had to make a u-turn. The room was typical, they do not have staff for 24 hr check in. It's done on your phone. They send you your room number and code to get in. The problem with this is there is no wifi service and Verizon has no phone service. Before you get there make sure you have all the information that you need. With no service there you are out of luck. They have a private beach but we never saw it. We had been driving all day and arrived at 2:00. Check in is at 4:00. We hoped to check in a little early. If our room had been ready they would have charged us $25 to check in early. They should change that policy."

Landmark Inn on Orcas Island

10/10 Excellent

"Great location with amazing views. Vincent was super attentive and helpful. Very happy with this choice"

Outlook Inn

10/10 Excellent

"Great atmosphere!"

The Edenwild Boutique Inn

10/10 Excellent

"Beautiful place! Friendly staff. Great breakfast."

Deer Harbor Inn

8/10 Good

"It’s very basic considering the cost. The bed is very soft and not particularly comfortable with 2 people of different weights. Everything just felt a bit thrown together, which is ok but at this price point we had higher expectations."

Trumpeter Inn

10/10 Excellent

"A magical stay with amazing breakfast each day and cute farm animals to visit. Loved everything about it 💗"