Best Isahaya Hotels in 2026 from HK$349 - Fully Refundable Options

Check prices for these dates

Tonight

Tomorrow

Next weekend

In two weeks

Our top choices for Isahaya hotels

A hot spring area with a view of a mountain and plants, a steam vent, and a seating area with a railing.

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

Isahaya

KITANO

HK$589 total

15 Nov - 16 Nov

A multi-story building with a flat facade, balconies, and a parking lot in front.

2. Tennen Onsen Hotel Kinshai

Isahaya

mutsuo

HK$490 total

7 Dec - 8 Dec

A view through a window with a view of a garden with various trees and bushes.

3. Hotel Flags Ishihaya Nagasaki

Isahaya

Suzanne

HK$401 total

7 Dec - 8 Dec

A modern building entrance with a set of stairs leading to a glass door entrance.

4. Isahaya Terminal Hotel

Isahaya

じゅん

HK$577 total

9 Nov - 10 Nov

A multi-story hotel with a modern design, featuring a prominent entrance and a sign indicating it is a hotel.

5. New Station Hotel Premiere

Isahaya

James

HK$486 total

3 Dec - 4 Dec

A hotel lobby with a reception desk, seating area, and large windows.

6. Hotel Route-Inn Isahaya Inter

Isahaya

?????

HK$739 total

8 Nov - 9 Nov

A modern waiting area with two sofas, a coffee table, and a reception desk with computers.

7. New Station Hotel

Isahaya

Kenji

HK$523 total

23 Nov - 24 Nov

A room with a large window offering a view of a lush green landscape, a wooden table with a vase, and a curtain partially drawn.

8. Morino Villa & Resort

Isahaya

Maximo

HK$556 total

7 Dec - 8 Dec

A spacious lobby with a reception desk, multiple seating areas, and a large bookshelf filled with books and decorative items.

9. KIKITSU Station Hotel

Isahaya

Barb

HK$478 total

2 Dec - 3 Dec

10. Omura Central Hotel

Omura

Jan

HK$713 total

6 Dec - 7 Dec

A Comfort Inn hotel with a modern design, featuring a flat facade, multiple windows, and a covered entrance.

11. Comfort Inn Nagasaki Airport

Omura

Asya

HK$413 total

29 Nov - 30 Nov

A modern reception area with a glass partition, a reception desk, seating area, and large windows.

12. Omura Station Hotel Nagasaki Airport

Omura

Franklin Judd

HK$548 total

7 Dec - 8 Dec

A modern kitchen with a central island, built-in shelves, and hanging pendant lights.

13. Hilton Nagasaki

Nagasaki

You Jin

HK$1,029 total

30 Nov - 1 Dec

A modern hotel lobby with white leather sofas, a coffee table, and potted plants.

14. Omura Station Hotel

Omura

Yasuhiko

HK$565 total

6 Dec - 7 Dec

A modern hotel lobby with a reception desk, glass doors, and a clean, tiled floor.

15. JR KYUSHU HOTEL Nagasaki

Nagasaki

sharon

HK$457 total

23 Nov - 24 Nov

A hot spring surrounded by rocks and vegetation, with a wooden structure on the left and lanterns along the edge.

16. Hoshino Resorts KAI Unzen

Unzen

Gabrielle

HK$3,226 total

24 Nov - 25 Nov

A koi pond with a stone edge, surrounded by lush greenery and a wooden fence.

17. Dormy Inn Nagasakiekimae Hot Springs

Nagasaki

Weizhuang

HK$747 total

30 Nov - 1 Dec

A buffet with a variety of food items, a seating area with chairs, and a view of the city through large windows.

18. THE GLOBAL VIEW Nagasaki

Nagasaki

Kimberly

HK$601 total

23 Nov - 24 Nov

A modern building with a glass-enclosed swimming pool and a view of the water.

19. Candeo Hotels Nagasaki Shinchi Chinatown

Nagasaki Chinatown

Chloe

HK$779 total

23 Nov - 24 Nov

A tall hotel with multiple floors and a prominent 'INN' sign at the top.

20. Toyoko Inn Nagasaki Ekimae

Nagasaki

Chul

HK$523 total

8 Nov - 9 Nov

View all properties

Save an average of 15% on thousands of hotels when you're signed in

Sign in

Sign up, it's free

Stay near popular Isahaya attractions

Isahaya Park

8.4/10 (11 reviews)

Built on ancient Isahaya Castle ruins, this park features the stunning Megane Bridge and 600-year-old camphor tree. Visit in April when thousands of azaleas transform the landscape during the annual festival.

See properties

Learn more about Isahaya

Discover the ancient Isahaya Spectacles Bridge and explore Isahaya Park's cherry blossoms in spring for iconic photo opportunities. Nearby Unzen-Amakusa National Park offers volcanic hiking trails, while Isahaya's summer festivals showcase traditional dance performances and local seafood specialities.

See all hotels in Isahaya

A stone bridge over a calm river with lush greenery and clear blue sky.

Top Isahaya Hotel Reviews

Hotel Forza Nagasaki

10/10 Excellent

"This hotel is definitely worth staying at because of its location. It is very convenient to stay here because of how close also the restaurants and shops are. The rooms are really big so you can definitely relax here."

JR KYUSHU HOTEL Nagasaki

10/10 Excellent

"Were in 3 different cities while visiting Japan. This hotel had the BEST breakfast of them all. Rooms are compact but very well laid out. Very nice amenities to take to your room, with pant presses, irons and hot and cold water available by the elevators. Rooms have water jug and kettle, cell phone charger with all the different types of connector, robe and slippers. Well located in Nagasaki, walking distance to public transit, and bus station. Walking distance to the wharf and Dejima historical site. Easy to take public transit to the Peace Park and Atomic museum, and Glovers Garden. Very comfortable bed with extra pillows."

More cheap stays in Isahaya

Hotel 21

8-13 Mezamemachi Nagasaki Nagasaki

HK$317

HK$349 total

19 Nov - 20 Nov

5/10 (18 reviews)

Hotels in Isahaya with star-rating

Frequently asked questions

What's the best place for a stay in Isahaya?

Based on our traveller data, New Station Hotel Premiere is one of the top choices for your stay. This hotel offers free parking and free WiFi. Tennen Onsen Hotel Kinshai is another good choice for your trip. See all available top hotels, or vacation rentals in Isahaya.

What are some of the best holiday rentals that Isahaya has to offer?

Rakuten STAY HOUSE x WILLSTYLE SASEBO: This holiday home rental outside of Isahaya has air conditioning and laundry facilities to help you feel perfectly comfortable in your new surroundings. Kitchen amenities include a fridge, a stovetop and a microwave. See all vacation rentals in Isahaya.

If I need to cancel my hotel reservation in Isahaya, will I receive a refund?

Yes! Most room reservations are fully refundable if cancelled prior to the accommodation's cancellation deadline, which is often 24 or 48 hours before your check-in date. If you have a non-refundable reservation, it might still be possible to cancel it and get a refund within 24 hours of your booking. Filter your search by fully refundable to find flexible hotel deals in Isahaya.

What are some accommodation options with pools in Isahaya?

STADIUM CITY HOTEL NAGASAKI: Provides a children's pool, an indoor pool and 5 restaurants. View all hotels with pools in Isahaya.

What is the best spa hotel in Isahaya?

Super Hotel Nagasaki Isahaya Natural Hot Spring is a top spa hotel with 152 rooms, free WiFi and off-street parking. Treat yourself to the hot springs at the on-site spa. See all spa hotels in Isahaya.

What's it like staying in Isahaya?

Visitors can enjoy all that Isahaya has to offer, including the parks and monuments. In Isahaya, there are 19 hotels and other accommodation options to choose from. Find out more about Isahaya.

What is there to see in Isahaya?

Landmarks like Isahaya Park, Kantaku no Sato and Megane Bridge might be worth a visit. Natural beauty is on display at Tsukinooka Park, Ikoinomori Takaki and Todoroki Fall. A couple of additional sights to add to your itinerary are Konagai Culture Hall and Sazanka Herb Museum. Take a look at what more there is to see and do in Expedia's Isahaya guide.

What's the seasonal weather like in Isahaya?

The hottest months are usually August and July, with an average temperature of 25°C, while the coldest months are January and February, with an average of 9°C. The rainiest months in Isahaya are June, July, August and May, with each month seeing an average of 382 mm of rainfall.

Explore a world of travel with Expedia

Things to do in Unzen

Isahaya hotels from HK$349

Change your mind

Treat yourself

Be picky

Go beyond your typical stay in Isahaya

Check prices for these dates

Filter by

Property class

Guest rating

Our top choices for Isahaya hotels

1. Super Hotel Nagasaki Isahaya Natural Hot Spring

2. Tennen Onsen Hotel Kinshai

3. Hotel Flags Ishihaya Nagasaki

4. Isahaya Terminal Hotel

5. New Station Hotel Premiere

6. Hotel Route-Inn Isahaya Inter

7. New Station Hotel

8. Morino Villa & Resort

9. KIKITSU Station Hotel

10. Omura Central Hotel

11. Comfort Inn Nagasaki Airport

12. Omura Station Hotel Nagasaki Airport

13. Hilton Nagasaki

14. Omura Station Hotel

15. JR KYUSHU HOTEL Nagasaki

16. Hoshino Resorts KAI Unzen

17. Dormy Inn Nagasakiekimae Hot Springs

18. THE GLOBAL VIEW Nagasaki

19. Candeo Hotels Nagasaki Shinchi Chinatown

20. Toyoko Inn Nagasaki Ekimae

Stay near popular Isahaya attractions

Isahaya Park

Learn more about Isahaya

Top Isahaya Hotel Reviews

Hotel Forza Nagasaki

More cheap stays in Isahaya

Hotel 21

Hotels in Isahaya with star-rating

Frequently asked questions

Explore a world of travel with Expedia

Go further with the Expedia app