What's it like in Harbor Island?

Harbor Island is a scenic neighbourhood known for its beautiful island views and array of dining options. Consider a visit to San Diego Bay as part of your Harbor Island travel plans.

Where is the best place to stay in Harbor Island?

Based on our traveller data, Sheraton San Diego Resort is one of the top choices for your stay in Harbor Island. This hotel is a short 1-minute walk from San Diego Bay, and it offers a marina and 3 outdoor pools.

How many hotels should I expect to find in the Harbor Island area?

Book one of Expedia's 6 hotels and other accommodation options in Harbor Island and start exploring everything San Diego has to offer.

If I need to cancel my hotel reservation in Harbor Island, will I receive a refund?

Yes, the majority of hotel reservations are fully refundable if cancelled before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, you may still be able to cancel and get a refund within 24 hours of your booking. Enter dates in and click on "Search", then you can use the "fully refundable" filter to view the top deals on offer in Harbor Island.

What is there to do around this San Diego neighbourhood?

San Diego Bay is an attraction you might want to check out while you're in Harbor Island. While you're out sightseeing in San Diego, make sure that you visit other sights such as Marine Corps Recruit Depot or USS Midway Museum.

Harbor Island Hotels: 2026 Top 10 Harbor Island Hotels with Limited-Time Deals @Expedia

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Our top choices for Harbor Island hotels

1. Sheraton San Diego Resort

Harbor Island

Andre

HK$1,920 total

includes taxes & fees

16 Aug - 17 Aug

2. Hampton Inn & Suites San Diego Airport Liberty Station

0.7 km from Harbor Island

Brenda

HK$1,415 total

includes taxes & fees

23 Aug - 24 Aug

3. TownePlace Suites by Marriott San Diego Airport/Liberty Station

0.7 km from Harbor Island

Jamie

HK$1,668 total

includes taxes & fees

30 Aug - 31 Aug

4. Holiday Inn Express San Diego Airport - Old Town by IHG

2.9 km from Harbor Island

Tirthankar

HK$1,424 total

includes taxes & fees

9 Aug - 10 Aug

5. Humphreys Half Moon Inn

1.8 km from Harbor Island

alex

HK$1,861 total

includes taxes & fees

31 Aug - 1 Sept

6. Bay Club Hotel & Marina

2 km from Harbor Island

Sandra

HK$1,563 total

includes taxes & fees

1 Sept - 2 Sept

Desk, blackout curtains, iron/ironing board, cots/infant beds

7. Best Western Yacht Harbor Hotel

1.7 km from Harbor Island

Natalia

HK$1,386 total

includes taxes & fees

1 Sept - 2 Sept

8. Comfort Inn San Diego Airport At The Harbor

2 km from Harbor Island

adele

HK$1,142 total

includes taxes & fees

31 Aug - 1 Sept

9. Best Western Plus Hacienda Hotel Old Town

Old Town San Diego, 3.3 km from Harbor Island

Joy

HK$1,290 total

includes taxes & fees

30 Aug - 31 Aug

10. Fairfield Inn & Suites San Diego Old Town

Old Town San Diego, 3 km from Harbor Island

Daniel

HK$1,261 total

includes taxes & fees

23 Aug - 24 Aug

11. Comfort Inn San Diego Old Town

Old Town San Diego, 2.9 km from Harbor Island

Jessica

HK$996 total

includes taxes & fees

23 Aug - 24 Aug

12. Courtyard by Marriott Old Town

Old Town San Diego, 3 km from Harbor Island

Carmen

HK$1,341 total

includes taxes & fees

23 Aug - 24 Aug

3 restaurants; breakfast, lunch and dinner served

13. Wyndham San Diego Bayside

3.3 km from Harbor Island

Juanita

HK$1,738 total

includes taxes & fees

3 Aug - 4 Aug

14. Old Town Inn

3 km from Harbor Island

Jennifer

HK$1,278 total

includes taxes & fees

19 Aug - 20 Aug

2 outdoor pools, open 6 AM to 10:00 PM, pool cabanas (surcharge)

15. Marriott Marquis San Diego Marina

Marina District, 4.3 km from Harbor Island

Randi

HK$2,735 total

includes taxes & fees

2 Sept - 3 Sept

16. The Westin San Diego Bayview

3.8 km from Harbor Island

Brandon

HK$1,997 total

includes taxes & fees

31 Aug - 1 Sept

17. Wyndham Garden San Diego Near SeaWorld

3.3 km from Harbor Island

marissa

HK$1,128 total

includes taxes & fees

30 Aug - 31 Aug

18. Sea Harbor Hotel

2.1 km from Harbor Island

Ryan

HK$1,126 total

includes taxes & fees

26 Aug - 27 Aug

19. Best Western Plus Island Palms Hotel & Marina

2.3 km from Harbor Island

Omar

HK$1,371 total

includes taxes & fees

1 Sept - 2 Sept

20. Courtyard by Marriott San Diego Downtown Little Italy

Little Italy, 3.9 km from Harbor Island

Aaron

HK$1,628 total

includes taxes & fees

26 Aug - 27 Aug

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Where to stay in Harbor Island

Find the best Harbor Island areas for the activities you enjoy most.

A plaza with a traditional building, benches, and a large tree.

Downtown San Diego

Known for its fantastic nightlife, fascinating museums and beautiful waterfront views, there's plenty to explore in Downtown San Diego. Top attractions like Petco Park and Port of San Diego are major draws. Catch the metro at Civic Center Station or Civic Center Station to see more of the city.

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A beach with surfers and swimmers during sunset.

Pacific Beach

Relax in beachside cafés in the morning, surf clean breaks in the afternoon and dance with a youthful club crowd at night at this coastal San Diego strip.

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A roller coaster under construction with scaffolding and a ticket booth in the foreground.

Mission Beach

If you're spending some time in Mission Beach, Mission Beach and Mission Bay are top sights worth seeing.

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Gaslamp Quarter

San Diego’s historic heart has shed its seedy past to emerge as one of the city’s premier dining, shopping and entertainment hubs.

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An aerial view of a coastal city with a marina, a large body of water, and a peninsula with buildings.

Mission Bay

If you're spending some time in Mission Bay, Mission Bay and Ski Beach are top sights worth seeing.

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Top Harbor Island Hotel Reviews

Best Western Inn & Suites San Diego – Zoo/SeaWorld Area

10/10 Excellent

"There were 5 of us staying in a 2 room suite. Needless to say we needed a lot of towels and with in minutes they were delivered to our room. I would stay there again. The one thing that I didn’t like was paying for parking"