Search Cottages in San Juan Island

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Check prices for these dates

In two weeks
16 Jan - 18 Jan
In two months
27 Feb - 1 Mar
In three months
27 Mar - 29 Mar
In four months
24 Apr - 26 Apr

Our top choices for San Juan Island cottages

Outdoor dining
Cottage by the Sea Su

Cottage by the Sea Su

Cottage by the Sea Su
Anacortes
9.6 out of 10, Exceptional, (149)
"Lovely property, amazing hosts, very clean"
United States
Heather M.
The price is HK$1,174
HK$2,043 total
includes taxes & fees
8 Jan - 9 Jan 2026
Cottage by the Sea Su
Terrace/patio
@ Marbella Lane - Seas the Bay Sanctuary

@ Marbella Lane - Seas the Bay Sanctuary

@ Marbella Lane - Seas the Bay Sanctuary
3.0 star property
Oak Harbor
The price is HK$1,387
HK$3,526 total
includes taxes & fees
11 Jan - 12 Jan 2026
@ Marbella Lane - Seas the Bay Sanctuary
Exterior
Cozy cottage, outdoor space & convenient location

Cozy cottage, outdoor space & convenient location

Cozy cottage, outdoor space & convenient location
Anacortes
9.2 out of 10, Wonderful, (60)
"Comfortable house with nice yard for hanging out. Great location with easy access to downtown stores and restaurants as well as access to trails and waterfront."
United States
Jim R.
The price is HK$755
HK$2,736 total
includes taxes & fees
4 Jan - 5 Jan 2026
Cozy cottage, outdoor space & convenient location
Outdoor dining
Waterfront cottage with tidelands, creek and waterfall!

Waterfront cottage with tidelands, creek and waterfall!

Waterfront cottage with tidelands, creek and waterfall!
Eastsound
10.0 out of 10, Exceptional, (14)
"Lovely home with a great living room and porch for lounging. "
United States
Margaret R.
The price is HK$3,463
HK$6,202 total
includes taxes & fees
11 Jan - 12 Jan 2026
Waterfront cottage with tidelands, creek and waterfall!
Exterior
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!

@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
3.0 star property
Oak Harbor
The price is HK$2,062
HK$4,273 total
includes taxes & fees
5 Jan - 6 Jan 2026
@ Marbella Lane Wave HS W/ev Charger, Oceanfront!
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Island Hotel Reviews

Friday Harbor House

Friday Harbor House

10/10 Excellent
"The room was clean and the staffs where very helpful. We had Christmas breakfast over there it was free breakfast. But the choice was great. "
Prosenjit 2-night trip
Posted 5 days ago
Friday Harbor House

Find out more about San Juan Island

San Juan Island Cottages information

Number of reviews
196
Accommodation
64 Cottages
Lowest Price
HK$2,043
Highest Price
HK$6,202

Frequently asked questions

Why book your cottage in San Juan Island with Expedia?
Expedia has some excellent cottages in San Juan Island, so get ready for a memorable holiday close to nature. If you have a set budget, select how much you're willing to spend and the star rating of your property. Or, use our filters to search for cottages with a hot tub or free WiFi. We'll help you find the perfect place whatever your plans or style of travel.
How can I find cheap cottages in San Juan Island?
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