A lighthouse on a rocky coastline with the ocean in the foreground.

Search Apartments in San Juan Islands

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
6 Nov - 8 Nov
In two months
18 Dec - 20 Dec
In three months
15 Jan - 17 Jan
In four months
12 Feb - 14 Feb

Our top choices for San Juan Islands apartments

Beautiful light all year long.

1. Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is HK$1,872
HK$3,017 total
includes taxes & fees
31 Oct - 1 Nov
Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
A wooden deck with a table and chairs overlooking a lake with boats.

2. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (5 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is HK$2,212
HK$4,920 total
includes taxes & fees
21 Oct - 22 Oct
Heart of Deer Harbor - Harbormaster House
A wooden deck with outdoor seating, a white picket fence, and a view of a lake and hills.

3. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (49 reviews)
"The hosts were very welcoming and accommodating. The space was perfect for our family and pets. The view was incredible. "
United States
Pamela W.
The price is HK$1,083
HK$2,036 total
includes taxes & fees
21 Oct - 22 Oct
Sea View Inn Summary:
A garden with a bench, a tree, and various plants.

4. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (38 reviews)
"Great location. I would stay here again. "
United States
Holly J.
The price is HK$942
HK$1,199 total
includes taxes & fees
19 Nov - 20 Nov
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Outdoor dining

5. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (60 reviews)
"Absolutely lovely"
United States
Taryn H.
The price is HK$1,342
HK$2,355 total
includes taxes & fees
21 Oct - 22 Oct
Sunny Island Cliff Side Views
A bedroom with a large bed, a nightstand, a dresser, and a window with curtains.

6. Welcome to Tranquility Place, Whidbey Island

Welcome to Tranquility Place, Whidbey Island
Oak Harbor
9.8 out of 10, Exceptional, (17 reviews)
"We had a great stay! The bathroom is really nice and the view from the bed was lovely."
United States
Kerry K.
The price is HK$749
HK$1,294 total
includes taxes & fees
21 Oct - 22 Oct
Welcome to Tranquility Place, Whidbey Island
A bed with multiple pillows and a window with curtains.

7. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (86 reviews)
"Quiet, clean and cozy"
United States
Aubrey
The price is HK$1,044
HK$2,380 total
includes taxes & fees
21 Oct - 22 Oct
900 square foot Studio loft in Fairhaven
A cozy living room with a wooden interior, a blue accent wall, a fireplace, a sofa, a chair, and a large window offering a view.

8. Sweeping view of Birch Bay from 2nd story apt.

Sweeping view of Birch Bay from 2nd story apt.
Blaine
9.8 out of 10, Exceptional, (6 reviews)
"What a wonderfully comfortable and clean place to stay. Has everything you need and fantastic views from the deck. Easy to settle into and relax. "
United States
Audra H.
The price is HK$667
HK$2,070 total
includes taxes & fees
3 Nov - 4 Nov
Sweeping view of Birch Bay from 2nd story apt.
A patio with white Adirondack chairs and a table, overlooking a river and buildings.

9. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.4 out of 10, Exceptional, (20 reviews)
"This is a great unit, plenty of parking, outside seating, gorgeous sunsets and right across the street from public beach access"
United States
Kelly A.
The price is HK$620
HK$1,930 total
includes taxes & fees
21 Oct - 22 Oct
Creekside Studio- right across from the Beach.
A wooden deck with a railing overlooking a body of water and distant land during sunset.

10. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (30 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is HK$1,413
HK$2,272 total
includes taxes & fees
28 Oct - 29 Oct
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
A compact living space with a sofa, a dining table, a kitchen area, and a bed.

11. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
9.0 out of 10, Wonderful, (7 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is HK$589
HK$984 total
includes taxes & fees
23 Oct - 24 Oct
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
A bedroom with a bed, a desk, a chair, a lamp, and a painting on the wall.

12. Nestled across from beach, find a versatile studio.

Nestled across from beach, find a versatile studio.
Blaine
10.0 out of 10, Exceptional, (1 review)
"This place was perfect for my stay in Birch Bay / Blaine while I attended a workshop. There was plenty of kitchen ware, a nice Keurig machine, an induction plate, air fryer and toaster oven. I would happily stay here again!"
United States
Kathy M.
The price is HK$589
HK$1,745 total
includes taxes & fees
3 Nov - 4 Nov
Nestled across from beach, find a versatile studio.
A modern kitchen with white cabinetry, a stainless steel microwave, a stove, and a dishwasher.

13. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (85 reviews)
"Convenient for downtown events. Very thoughtful hosts."
United States
Germone S.
The price is HK$793
HK$1,388 total
includes taxes & fees
3 Nov - 4 Nov
Downtown Bellingham Apartment
A two-story house with a steeply pitched roof, a front porch, and a wooden fence.

14. Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham

Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham
2.0 star property
York
10.0 out of 10, Exceptional, (1 review)
"Spotless"
United States
Henry
The price is HK$1,298
HK$2,323 total
includes taxes & fees
9 Nov - 10 Nov
Upstairs at Thevictorian - Lush Walkable and Dog-friendly Retreat - Steps From Downtown Bellingham
A wooden deck with a gazebo, a grassy area with flowers, and a view of the sunset over the ocean.

15. Home Away From Home… for you and for your pets!

Home Away From Home… for you and for your pets!
Oak Harbor
9.0 out of 10, Wonderful, (18 reviews)
"Beautiful place and gorgeous view. I would like to stay there again next year"
United States
Ina T.
The price is HK$3,178
HK$4,968 total
includes taxes & fees
21 Oct - 22 Oct
Home Away From Home… for you and for your pets!
A living room with a brown leather sofa, a wooden coffee table, a large window with a view of a tree, and a television on a wooden stand.

16. Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard

Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Sehome
10.0 out of 10, Exceptional, (26 reviews)
"Location is awesome, the hosts responsiveness and information sheet on local spots to eat was great. "
United States
Kate R.
The price is HK$942
HK$2,258 total
includes taxes & fees
28 Oct - 29 Oct
Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
A house with a steeply pitched roof, a front porch, and a wooden fence.

17. Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham

Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham
York
9.8 out of 10, Exceptional, (25 reviews)
"A sweet house with a great location. We enjoyed our stay!"
United States
Greg R.
The price is HK$973
HK$2,318 total
includes taxes & fees
9 Nov - 10 Nov
Upstairs at TheVictorian - Lush, Walkable, and Dog-Friendly Retreat - Steps from Downtown Bellingham
A beach with people, boats, and a forested hill in the background.

18. Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.

Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.
Point Roberts
10.0 out of 10, Exceptional, (14 reviews)
"This place is simply magical! The suite is beautiful, Stephen, the host is charming and attentive and the location is unbelievable!Thank you for letting us stay in your little bit of paradise."
United States
Michele A.
The price is HK$1,177
HK$1,463 total
includes taxes & fees
27 Oct - 28 Oct
Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.
A modern kitchen with a marble island, wooden dining table, and chairs, a fireplace, and a large window with a view of greenery.

19. Ground Floor 2 bed Condo at Jacob's Landing

Ground Floor 2 bed Condo at Jacob's Landing
Blaine
10.0 out of 10, Exceptional, (2 reviews)
"Great listing, perfectly matched the description and an incredible location. Host was very responsive, friendly, and accommodating. We hope to return!"
United States
Max C.
The price is HK$903
HK$3,417 total
includes taxes & fees
9 Nov - 10 Nov
Ground Floor 2 bed Condo at Jacob's Landing
A coffee station with two coffee makers and a basket of cups.

20. Spacious 2-bed Room|Pool|Free Wifi

Spacious 2-bed Room|Pool|Free Wifi
Sehome
10.0 out of 10, Exceptional, (3 reviews)
"We appreciated having space enough for three without feeling cramped. Close enough to Fairhaven station too which helped with our plans."
United States
Anonymous traveller
The price is HK$599
HK$692 total
includes taxes & fees
21 Oct - 22 Oct
Spacious 2-bed Room|Pool|Free Wifi
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Top San Juan Islands Hotel Reviews

Deer Harbor Inn

Deer Harbor Inn

10/10 Excellent
"Cute cabin, comfy bed, everything we needed. Wished we had more time there."
Sally 1-night trip
Posted 1 day ago
Deer Harbor Inn

Find out more about San Juan Islands

San Juan Islands Apartments information

Number of reviews
515
Accommodation
36 Apartments
Lowest Price
HK$692
Highest Price
HK$4,968

Explore a world of travel with Expedia