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Our top choices for San Juan Islands apartments

1. Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach

Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach
Eastsound
9.2 out of 10, Wonderful, (76 reviews)
"The little house was a comfortable and clean stay."
United States
Lyn W.
The price is HK$795
HK$2,003 total
includes taxes & fees
19 Oct - 20 Oct
Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach

2. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (4 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is HK$2,330
HK$5,083 total
includes taxes & fees
19 Oct - 20 Oct
Heart of Deer Harbor - Harbormaster House

3. Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is HK$2,079
HK$3,277 total
includes taxes & fees
6 Oct - 7 Oct
Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

4. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
9.0 out of 10, Wonderful, (6 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is HK$628
HK$1,027 total
includes taxes & fees
24 Sept - 25 Sept
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

5. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (57 reviews)
"Absolutely lovely"
United States
Taryn H.
The price is HK$1,342
HK$2,354 total
includes taxes & fees
29 Sept - 30 Sept
Sunny Island Cliff Side Views

6. Studio with covered deck and Birch Bay View

Studio with covered deck and Birch Bay View
Blaine
7.6 out of 10, Good, (4 reviews)
"Great weather and great locatio6"
United States
michael c.
The price is HK$635
HK$1,605 total
includes taxes & fees
12 Oct - 13 Oct
Studio with covered deck and Birch Bay View

7. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (47 reviews)
"The hosts were very welcoming and accommodating. The space was perfect for our family and pets. The view was incredible. "
United States
Pamela W.
The price is HK$1,083
HK$1,965 total
includes taxes & fees
23 Sept - 24 Sept
Sea View Inn Summary:

8. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (37 reviews)
"Great location. I would stay here again. "
United States
Holly J.
The price is HK$941
HK$1,199 total
includes taxes & fees
28 Sept - 29 Sept
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

9. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.4 out of 10, Exceptional, (20 reviews)
"The place was in tip top new condition. We enjoyed the nearby town of Blaine and the restaurants there. Took day trips to Mt Baker, Vancouver, and Friday Harbor in the San Juan Islands."
United States
James
The price is HK$620
HK$1,929 total
includes taxes & fees
15 Oct - 16 Oct
Creekside Studio- right across from the Beach.

10. Nestled across from beach, find a versatile studio.

Nestled across from beach, find a versatile studio.
Blaine
10.0 out of 10, Exceptional, (1 review)
"This place was perfect for my stay in Birch Bay / Blaine while I attended a workshop. There was plenty of kitchen ware, a nice Keurig machine, an induction plate, air fryer and toaster oven. I would happily stay here again!"
United States
Kathy M.
The price is HK$549
HK$1,518 total
includes taxes & fees
27 Sept - 28 Sept
Nestled across from beach, find a versatile studio.

11. Sunny Queen Bed Room|Pool|Free Wifi

Sunny Queen Bed Room|Pool|Free Wifi
Sehome
The price is HK$627
HK$723 total
includes taxes & fees
1 Oct - 2 Oct
Sunny Queen Bed Room|Pool|Free Wifi

12. Downstairs@TheVictorian: Downtown and Dog-Friendly

Downstairs@TheVictorian: Downtown and Dog-Friendly
York
10.0 out of 10, Exceptional, (28 reviews)
"Great location, cute yard, and a very nice kitchen :)"
United States
David K.
The price is HK$812
HK$2,089 total
includes taxes & fees
24 Sept - 25 Sept
Downstairs@TheVictorian: Downtown and Dog-Friendly

13. Home Away From Home… for you and for your pets!

Home Away From Home… for you and for your pets!
Oak Harbor
9.0 out of 10, Wonderful, (18 reviews)
"Beautiful place and gorgeous view. I would like to stay there again next year"
United States
Ina T.
The price is HK$3,177
HK$4,966 total
includes taxes & fees
23 Sept - 24 Sept
Home Away From Home… for you and for your pets!

14. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (85 reviews)
"Although the place was very spacious and it had coffee and some treats, it is located in an edgy part of town with some riff-raf wandering around and it is not walkable to too much. The apartment is outfitted by someone’s grandmother."
United States
David
The price is HK$812
HK$1,409 total
includes taxes & fees
23 Sept - 24 Sept
Downtown Bellingham Apartment

15. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (83 reviews)
"Convenient to everything and such a perfect spot to land! So many awesome books. The beds were incredibly comfortable."
United States
Magayr
The price is HK$1,043
HK$2,268 total
includes taxes & fees
30 Sept - 1 Oct
900 square foot Studio loft in Fairhaven

16. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (30 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is HK$1,412
HK$2,236 total
includes taxes & fees
24 Sept - 25 Sept
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

17. Downstairs Thevictorian Downtown and Dog-friendly

Downstairs Thevictorian Downtown and Dog-friendly
2.0 star property
York
The price is HK$1,234
HK$2,299 total
includes taxes & fees
24 Sept - 25 Sept
Downstairs Thevictorian Downtown and Dog-friendly

18. Spacious 2-bed Room|Pool|Free Wifi

Spacious 2-bed Room|Pool|Free Wifi
Sehome
The price is HK$689
HK$793 total
includes taxes & fees
5 Oct - 6 Oct
Spacious 2-bed Room|Pool|Free Wifi

19. Ground Floor 2 bed Condo at Jacob's Landing

Ground Floor 2 bed Condo at Jacob's Landing
Blaine
10.0 out of 10, Exceptional, (2 reviews)
"Great listing, perfectly matched the description and an incredible location. Host was very responsive, friendly, and accommodating. We hope to return!"
United States
Max C.
The price is HK$832
HK$2,934 total
includes taxes & fees
13 Oct - 14 Oct
Ground Floor 2 bed Condo at Jacob's Landing

20. Cute Cottage with fully fenced yard, covered back patio with firepit.

Cute Cottage with fully fenced yard, covered back patio with firepit.
Blaine
The price is HK$941
HK$2,564 total
includes taxes & fees
30 Sept - 1 Oct
Cute Cottage with fully fenced yard, covered back patio with firepit.
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Islands Hotel Reviews

Find out more about San Juan Islands

San Juan Islands Apartments information

Number of reviews
1
Accommodation
36 Apartments
Lowest Price
HK$2,299
Highest Price
HK$2,740

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