A lighthouse on a rocky coastline with the ocean in the foreground.

Search Apartments in San Juan Islands

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

In two weeks
9 Oct - 11 Oct
In two months
20 Nov - 22 Nov
In three months
18 Dec - 20 Dec
In four months
15 Jan - 17 Jan

Our top choices for San Juan Islands apartments

Exterior

1. Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach

Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach
Eastsound
9.2 out of 10, Wonderful, (76 reviews)
"The little house was a comfortable and clean stay."
United States
Lyn W.
The price is HK$795
HK$2,003 total
includes taxes & fees
19 Oct - 20 Oct
Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach
Property grounds

2. Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is HK$1,871
HK$3,016 total
includes taxes & fees
5 Oct - 6 Oct
Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Outdoor dining

3. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (4 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is HK$2,330
HK$5,083 total
includes taxes & fees
6 Oct - 7 Oct
Heart of Deer Harbor - Harbormaster House
Outdoor dining

4. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (57 reviews)
"Absolutely lovely"
United States
Taryn H.
The price is HK$1,498
HK$2,551 total
includes taxes & fees
25 Sept - 26 Sept
Sunny Island Cliff Side Views
Property grounds

5. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (37 reviews)
"Great location. I would stay here again. "
United States
Holly J.
The price is HK$941
HK$1,199 total
includes taxes & fees
28 Sept - 29 Sept
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Terrace/patio

6. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (47 reviews)
"The hosts were very welcoming and accommodating. The space was perfect for our family and pets. The view was incredible. "
United States
Pamela W.
The price is HK$1,083
HK$1,965 total
includes taxes & fees
22 Sept - 23 Sept
Sea View Inn Summary:
2 bedrooms, desk, free WiFi, bed sheets

7. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (81 reviews)
"Convenient to everything and such a perfect spot to land! So many awesome books. The beds were incredibly comfortable."
United States
Magayr
The price is HK$1,043
HK$2,299 total
includes taxes & fees
22 Sept - 23 Sept
900 square foot Studio loft in Fairhaven
Property grounds

8. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (30 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is HK$1,412
HK$2,260 total
includes taxes & fees
22 Sept - 23 Sept
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Coffee/tea maker, fridge, microwave, oven

9. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (85 reviews)
"Although the place was very spacious and it had coffee and some treats, it is located in an edgy part of town with some riff-raf wandering around and it is not walkable to too much. The apartment is outfitted by someone’s grandmother."
United States
David
The price is HK$784
HK$1,323 total
includes taxes & fees
13 Oct - 14 Oct
Downtown Bellingham Apartment
Smart TV

10. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
8.8 out of 10, Excellent, (5 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is HK$628
HK$1,027 total
includes taxes & fees
24 Sept - 25 Sept
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Exterior

11. Downstairs@TheVictorian: Downtown and Dog-Friendly

Downstairs@TheVictorian: Downtown and Dog-Friendly
York
10.0 out of 10, Exceptional, (28 reviews)
"Great location, cute yard, and a very nice kitchen :)"
United States
David K.
The price is HK$981
HK$2,342 total
includes taxes & fees
24 Sept - 25 Sept
Downstairs@TheVictorian: Downtown and Dog-Friendly
Smart TV, fireplace

12. Galbraith Mountain Forest Escape

Galbraith Mountain Forest Escape
Bellingham
10.0 out of 10, Exceptional, (22 reviews)
"Great experience!! We felt very taken care of and glad to stay. We will stay again next time."
United States
Eric F.
The price is HK$1,334
HK$3,020 total
includes taxes & fees
22 Sept - 23 Sept
Galbraith Mountain Forest Escape
Travel cot, WiFi, bed sheets

13. Nestled across from beach, find a versatile studio.

Nestled across from beach, find a versatile studio.
Blaine
10.0 out of 10, Exceptional, (1 review)
"This place was perfect for my stay in Birch Bay / Blaine while I attended a workshop. There was plenty of kitchen ware, a nice Keurig machine, an induction plate, air fryer and toaster oven. I would happily stay here again!"
United States
Kathy M.
The price is HK$549
HK$1,510 total
includes taxes & fees
23 Sept - 24 Sept
Nestled across from beach, find a versatile studio.
Iron/ironing board, travel cot, WiFi, bed sheets

14. Studio with covered deck and Birch Bay View

Studio with covered deck and Birch Bay View
Blaine
7.6 out of 10, Good, (4 reviews)
"Great weather and great locatio6"
United States
michael c.
The price is HK$643
HK$1,605 total
includes taxes & fees
12 Oct - 13 Oct
Studio with covered deck and Birch Bay View
Terrace/patio

15. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.4 out of 10, Exceptional, (20 reviews)
"The place was in tip top new condition. We enjoyed the nearby town of Blaine and the restaurants there. Took day trips to Mt Baker, Vancouver, and Friday Harbor in the San Juan Islands."
United States
James
The price is HK$620
HK$1,929 total
includes taxes & fees
20 Oct - 21 Oct
Creekside Studio- right across from the Beach.
On the beach, sun-loungers, beach towels

16. Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.

Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.
Point Roberts
10.0 out of 10, Exceptional, (14 reviews)
The price is HK$1,098
HK$1,375 total
includes taxes & fees
22 Sept - 23 Sept
Luxury Maple Beach Waterfront King apartment-Ground Floor only 50 feet to Beach.
1 bedroom, Internet

17. Downstairs Thevictorian Downtown and Dog-friendly

Downstairs Thevictorian Downtown and Dog-friendly
2.0 star property
York
The price is HK$1,329
HK$2,404 total
includes taxes & fees
24 Sept - 25 Sept
Downstairs Thevictorian Downtown and Dog-friendly
Property grounds

18. Home Away From Home… for you and for your pets!

Home Away From Home… for you and for your pets!
Oak Harbor
9.0 out of 10, Wonderful, (18 reviews)
"Beautiful place and gorgeous view. I would like to stay there again next year"
United States
Ina T.
The price is HK$3,177
HK$4,762 total
includes taxes & fees
22 Sept - 23 Sept
Home Away From Home… for you and for your pets!
Living area

19. Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard

Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Sehome
10.0 out of 10, Exceptional, (20 reviews)
"Location is awesome, the hosts responsiveness and information sheet on local spots to eat was great. "
United States
Kate R.
Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Terrace/patio

20. Waterfront Duplex - from 2 bedroom/1 bath apartment up to 4 Bedrooms/3 Bathrooms

Waterfront Duplex - from 2 bedroom/1 bath apartment up to 4 Bedrooms/3 Bathrooms
Point Roberts
10.0 out of 10, Exceptional, (3 reviews)
"Very welcoming host. Great amenities and gorgeous view."
United States
Katherine E.
The price is HK$1,569
HK$2,090 total
includes taxes & fees
23 Sept - 24 Sept
Waterfront Duplex - from 2 bedroom/1 bath apartment up to 4 Bedrooms/3 Bathrooms
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties
Save an average of 15% on thousands of hotels when you're signed in
Sign in
Sign up, it's free

Top San Juan Islands Hotel Reviews

Friday Harbor Suites

Friday Harbor Suites

8/10 Good
"Large “suite” in a pretty dated lodging."
Michelle 1-night trip
Posted 13 hours ago
Friday Harbor Suites

Find out more about San Juan Islands

San Juan Islands Apartments information

Number of reviews
1
Accommodation
36 Apartments
Lowest Price
HK$2,404
Highest Price
HK$2,769

Explore a world of travel with Expedia