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Our top choices for San Juan Islands apartments

1. Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach

Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach
Eastsound
9.2 out of 10, Wonderful, (76 reviews)
"The little house was a comfortable and clean stay."
United States
Lyn W.
The price is HK$795
HK$2,002 total
includes taxes & fees
29 Sept - 30 Sept
Dog Friendly Studio with Kitchenette, WiFi, Yard and Fire Pit near Eastsound Beach

2. Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

Madrona Suite - Summer on Orcas Island- rest where sea meets stillness
Eastsound
10.0 out of 10, Exceptional, (28 reviews)
"My husband and I had a lovely stay. The property is beautiful and quiet. Jodi was communicative and accommodating."
United States
Heather H.
The price is HK$1,871
HK$2,859 total
includes taxes & fees
5 Oct - 6 Oct
Madrona Suite - Summer on Orcas Island- rest where sea meets stillness

3. Heart of Deer Harbor - Harbormaster House

Heart of Deer Harbor - Harbormaster House
Deer Harbor
10.0 out of 10, Exceptional, (5 reviews)
"Loved the house! Beautiful view, nicely decorated, very comfortable. Will definitely stay here again!"
United States
Cndi B.
The price is HK$2,330
HK$4,831 total
includes taxes & fees
1 Oct - 2 Oct
Heart of Deer Harbor - Harbormaster House

4. Sunny Island Cliff Side Views

Sunny Island Cliff Side Views
Anacortes
9.8 out of 10, Exceptional, (58 reviews)
"Absolutely lovely"
United States
Taryn H.
The price is HK$1,341
HK$2,251 total
includes taxes & fees
29 Sept - 30 Sept
Sunny Island Cliff Side Views

5. Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!
Anacortes
10.0 out of 10, Exceptional, (37 reviews)
"Great location. I would stay here again. "
United States
Holly J.
The price is HK$941
HK$1,199 total
includes taxes & fees
29 Sept - 30 Sept
Happy Valley Studio - Peaceful rest in nature, just 5 minutes from downtown!

6. Sea View Inn Summary:

Sea View Inn Summary:
Anacortes
9.2 out of 10, Wonderful, (47 reviews)
"The hosts were very welcoming and accommodating. The space was perfect for our family and pets. The view was incredible. "
United States
Pamela W.
The price is HK$1,082
HK$1,965 total
includes taxes & fees
29 Sept - 30 Sept
Sea View Inn Summary:

7. The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive
Bellingham
10.0 out of 10, Exceptional, (30 reviews)
"Charming property, comfy, clean and well appointed."
United States
Sara M.
The price is HK$1,412
HK$2,158 total
includes taxes & fees
29 Sept - 30 Sept
The Sweet Suite at The Dolls' Dome-ane on historic Chuckanut Drive

8. 900 square foot Studio loft in Fairhaven

900 square foot Studio loft in Fairhaven
South Bellingham
10.0 out of 10, Exceptional, (84 reviews)
"Convenient to everything and such a perfect spot to land! So many awesome books. The beds were incredibly comfortable."
United States
Magayr
The price is HK$1,043
HK$2,189 total
includes taxes & fees
30 Sept - 1 Oct
900 square foot Studio loft in Fairhaven

9. Full Apt with large kitchen across the street from the beach.

Full Apt with large kitchen across the street from the beach.
Blaine
10.0 out of 10, Exceptional, (3 reviews)
"This is a very comfortable apartment with an amazingly stocked kitchen. Everything we needed was there. It is steps from the bay, and a quick walk to the state park. I would definitely stay here again!"
United States
Carla G.
The price is HK$510
HK$1,750 total
includes taxes & fees
29 Sept - 30 Sept
Full Apt with large kitchen across the street from the beach.

10. Downtown Bellingham Apartment

Downtown Bellingham Apartment
Lettered Streets
10.0 out of 10, Exceptional, (85 reviews)
"Although the place was very spacious and it had coffee and some treats, it is located in an edgy part of town with some riff-raf wandering around and it is not walkable to too much. The apartment is outfitted by someone’s grandmother."
United States
David
The price is HK$902
HK$1,509 total
includes taxes & fees
19 Oct - 20 Oct
Downtown Bellingham Apartment

11. Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA
Ferndale
9.0 out of 10, Wonderful, (6 reviews)
"Cameron was super friendly and accommodating. The place was just what we needed for one night. It was private and well taken care of. Looking forward to coming back. "
United States
Josefine V.
The price is HK$628
HK$1,027 total
includes taxes & fees
29 Sept - 30 Sept
Hobby Farm Hideaway: Quiet, Private Guest Suite with Yard in Ferndale, WA

12. Studio with covered deck and Birch Bay View

Studio with covered deck and Birch Bay View
Blaine
7.6 out of 10, Good, (4 reviews)
"Great weather and great locatio6"
United States
michael c.
The price is HK$635
HK$1,573 total
includes taxes & fees
29 Sept - 30 Sept
Studio with covered deck and Birch Bay View

13. Welcome to Tranquility Place, Whidbey Island

Welcome to Tranquility Place, Whidbey Island
Oak Harbor
9.8 out of 10, Exceptional, (15 reviews)
"We had a great stay! The bathroom is really nice and the view from the bed was lovely."
United States
Kerry K.
The price is HK$755
HK$1,301 total
includes taxes & fees
29 Sept - 30 Sept
Welcome to Tranquility Place, Whidbey Island

14. Downstairs@TheVictorian: Downtown and Dog-Friendly

Downstairs@TheVictorian: Downtown and Dog-Friendly
York
10.0 out of 10, Exceptional, (28 reviews)
"Great location, cute yard, and a very nice kitchen :)"
United States
David K.
The price is HK$664
HK$1,868 total
includes taxes & fees
29 Sept - 30 Sept
Downstairs@TheVictorian: Downtown and Dog-Friendly

15. Nestled across from beach, find a versatile studio.

Nestled across from beach, find a versatile studio.
Blaine
10.0 out of 10, Exceptional, (1 review)
"This place was perfect for my stay in Birch Bay / Blaine while I attended a workshop. There was plenty of kitchen ware, a nice Keurig machine, an induction plate, air fryer and toaster oven. I would happily stay here again!"
United States
Kathy M.
The price is HK$549
HK$1,486 total
includes taxes & fees
29 Sept - 30 Sept
Nestled across from beach, find a versatile studio.

16. Galbraith Mountain Forest Escape

Galbraith Mountain Forest Escape
Bellingham
10.0 out of 10, Exceptional, (22 reviews)
"Great experience!! We felt very taken care of and glad to stay. We will stay again next time."
United States
Eric F.
The price is HK$1,334
HK$2,957 total
includes taxes & fees
29 Sept - 30 Sept
Galbraith Mountain Forest Escape

17. Creekside Studio- right across from the Beach.

Creekside Studio- right across from the Beach.
Birch Bay
9.4 out of 10, Exceptional, (20 reviews)
"The place was in tip top new condition. We enjoyed the nearby town of Blaine and the restaurants there. Took day trips to Mt Baker, Vancouver, and Friday Harbor in the San Juan Islands."
United States
James
The price is HK$620
HK$1,882 total
includes taxes & fees
15 Oct - 16 Oct
Creekside Studio- right across from the Beach.

18. Downstairs Thevictorian Downtown and Dog-friendly

Downstairs Thevictorian Downtown and Dog-friendly
2.0 star property
York
The price is HK$1,027
HK$2,068 total
includes taxes & fees
29 Sept - 30 Sept
Downstairs Thevictorian Downtown and Dog-friendly

19. Home Away From Home… for you and for your pets!

Home Away From Home… for you and for your pets!
Oak Harbor
9.0 out of 10, Wonderful, (18 reviews)
"Beautiful place and gorgeous view. I would like to stay there again next year"
United States
Ina T.
The price is HK$3,177
HK$4,668 total
includes taxes & fees
29 Sept - 30 Sept
Home Away From Home… for you and for your pets!

20. Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard

Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Sehome
10.0 out of 10, Exceptional, (21 reviews)
"Location is awesome, the hosts responsiveness and information sheet on local spots to eat was great. "
United States
Kate R.
The price is HK$1,098
HK$2,338 total
includes taxes & fees
18 Oct - 19 Oct
Walk-Everywhere Patio Suite with King Bed, Parking and Fenced Yard
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
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Top San Juan Islands Hotel Reviews

Find out more about San Juan Islands

San Juan Islands Apartments information

Number of reviews
584
Accommodation
36 Apartments
Lowest Price
HK$1,027
Highest Price
HK$4,831

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