San Diego Mission Bay Hotels

  • Change your mind

    Book hotels with free cancellation
  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
  • Be picky

    Search almost a million properties worldwide

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Star rating

Our top choices for Mission Bay hotels

ITH Mission Beach Backpacker Hostel

ITH Mission Beach Backpacker Hostel
2.0 star property
Central Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (207 reviews)
"Staff was super friendly and very welcoming!! "
United States
Natalie
ITH Mission Beach Backpacker Hostel

Boardwalk Hotel: Bikes, Boards & Beach Gear Included

Boardwalk Hotel: Bikes, Boards & Beach Gear Included
3.0 star property
Mission Beach, 2.4 km from Mission Bay
9.4 out of 10, Exceptional, (308 reviews)
"Great place to stay when you are in San Diego! Total beach vibes. Super clean and easy to check in. Definitely will be booking there again! "
United States
Carla
The price is HK$1,663
HK$1,875 total
includes taxes & fees
4 Mar - 5 Mar
Boardwalk Hotel: Bikes, Boards & Beach Gear Included

The Wayfarer San Diego

The Wayfarer San Diego
4.0 star property
Mission Beach, 3 km from Mission Bay
9.4 out of 10, Exceptional, (1,750 reviews)
"Beautiful place. "
United States
Roxana
The price is HK$1,689
HK$1,941 total
includes taxes & fees
4 Mar - 5 Mar
The Wayfarer San Diego

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town
3.0 star property
3.2 km from Mission Bay
9.2 out of 10, Wonderful, (693 reviews)
"Great place to stay, nice room Highly recommended !!"
United States
Wilfredo
The price is HK$1,216
HK$1,398 total
includes taxes & fees
8 Mar - 9 Mar
Hampton Inn & Suites by Hilton San Diego SeaWorld Near Old Town

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

Fairfield Inn & Suites by Marriott San Diego Pacific Beach
3.0 star property
Pacific Beach, 2.9 km from Mission Bay
9.0 out of 10, Wonderful, (859 reviews)
"Excellent hotel and really nice breakfast"
United States
Luke
The price is HK$1,025
HK$1,178 total
includes taxes & fees
12 Mar - 13 Mar
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

San Diego Mission Bay Resort

San Diego Mission Bay Resort
4.0 star property
Mission Bay, 1.5 km from Mission Bay
8.4 out of 10, Very good, (1,352 reviews)
"Great place for our family getaway! Loved the S’mores on the beach! "
United States
Dani
The price is HK$1,869
HK$2,562 total
includes taxes & fees
8 Mar - 9 Mar
San Diego Mission Bay Resort

Holiday Inn Express San Diego - SeaWorld Area by IHG

Holiday Inn Express San Diego - SeaWorld Area by IHG
2.5 star property
2.5 km from Mission Bay
8.8 out of 10, Excellent, (1,006 reviews)
"very spacious room very clean close to everything restaurant stores Central located."
United States
Walter
The price is HK$1,228
HK$1,411 total
includes taxes & fees
8 Mar - 9 Mar
Holiday Inn Express San Diego - SeaWorld Area by IHG

Bahia Resort Hotel

Bahia Resort Hotel
3.5 star property
Central Mission Beach, 2 km from Mission Bay
8.6 out of 10, Excellent, (1,906 reviews)
"Amazing place "
United States
Richard
The price is HK$1,522
HK$2,184 total
includes taxes & fees
8 Mar - 9 Mar
Bahia Resort Hotel

Best Western San Diego Pacific Beach/Mission Bay

Best Western San Diego Pacific Beach/Mission Bay
2.5 star property
2.5 km from Mission Bay
8.4 out of 10, Very good, (288 reviews)
"Clean hotel & great location. "
United States
yardley
The price is HK$788
HK$906 total
includes taxes & fees
4 Mar - 5 Mar
Best Western San Diego Pacific Beach/Mission Bay

Catamaran Resort and Spa

Catamaran Resort and Spa
4.0 star property
Mission Beach, 2.9 km from Mission Bay
8.6 out of 10, Excellent, (1,179 reviews)
"Location! "
United States
Jennifer
The price is HK$1,855
HK$2,548 total
includes taxes & fees
4 Mar - 5 Mar
Catamaran Resort and Spa

Comfort Inn Sea World Area

Comfort Inn Sea World Area
3.5 star property
3.2 km from Mission Bay
8.6 out of 10, Excellent, (3,432 reviews)
"Nice beds and breakfast, really convenient "
Canada
Margarita
The price is HK$765
HK$879 total
includes taxes & fees
10 Mar - 11 Mar
Comfort Inn Sea World Area

Surfer Beach Hotel

Surfer Beach Hotel
3.0 star property
Pacific Beach, 3 km from Mission Bay
8.2 out of 10, Very good, (1,215 reviews)
"Room was clean, staff was great, great location, will definitely stay there again.."
United States
Kimberly
The price is HK$1,861
HK$2,102 total
includes taxes & fees
4 Mar - 5 Mar
Surfer Beach Hotel

GreenTree Inn San Diego Mission Bay

GreenTree Inn San Diego Mission Bay
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,957 reviews)
"Great stay"
United States
Lizeth
The price is HK$754
HK$867 total
includes taxes & fees
8 Mar - 9 Mar
GreenTree Inn San Diego Mission Bay

SureStay Hotel by Best Western San Diego Pacific Beach

SureStay Hotel by Best Western San Diego Pacific Beach
2.5 star property
Pacific Beach, 3 km from Mission Bay
8.0 out of 10, Very good, (1,547 reviews)
"Room was nice, clean, staff was friendly, "
United States
philip
The price is HK$669
HK$755 total
includes taxes & fees
4 Mar - 5 Mar
SureStay Hotel by Best Western San Diego Pacific Beach

ITH Beach Bungalow Surf Hostel

ITH Beach Bungalow Surf Hostel
2.0 star property
Pacific Beach, 3.2 km from Mission Bay
8.0 out of 10, Very good, (256 reviews)
"Great location. "
United States
Xihao
The price is HK$971
HK$1,095 total
includes taxes & fees
26 Mar - 27 Mar
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

Heritage Inn San Diego
2.0 star property
2.5 km from Mission Bay
7.4 out of 10, Good, (1,298 reviews)
"Clean room, staff was great during check in and checking out. "
United States
Amber
The price is HK$485
HK$557 total
includes taxes & fees
24 Mar - 25 Mar
Heritage Inn San Diego

Wyndham Garden San Diego Near SeaWorld

Wyndham Garden San Diego Near SeaWorld
3.0 star property
2.8 km from Mission Bay
7.4 out of 10, Good, (4,177 reviews)
"Good location friendly staff"
United States
Anya
The price is HK$696
HK$800 total
includes taxes & fees
4 Mar - 5 Mar
Wyndham Garden San Diego Near SeaWorld

E-Z 8 Motel Old Town

E-Z 8 Motel Old Town
2.5 star property
Old Town San Diego, 3.1 km from Mission Bay
6.6 out of 10, (2,109 reviews)
"Better than last time"
United States
benjamin
The price is HK$523
HK$601 total
includes taxes & fees
4 Mar - 5 Mar
E-Z 8 Motel Old Town

Pacific Terrace Hotel

Pacific Terrace Hotel
4.0 star property
North Pacific Beach, 3.8 km from Mission Bay
9.8 out of 10, Exceptional, (1,005 reviews)
"Great location, quiet, excellent views, amazing staff, close to restaurants, we will be back. "
United States
Tammy
The price is HK$2,703
HK$3,107 total
includes taxes & fees
4 Mar - 5 Mar
Pacific Terrace Hotel

Tower23 Hotel

Tower23 Hotel
4.0 star property
North Pacific Beach, 3.6 km from Mission Bay
9.6 out of 10, Exceptional, (1,001 reviews)
"Helpful, friendly staff, including front desk and valet."
United States
Charles
The price is HK$2,651
HK$2,995 total
includes taxes & fees
30 Mar - 31 Mar
Tower23 Hotel
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.

Top Mission Bay Hotel Reviews

Hotels near other Mission Bay attractions

Find out more about Mission Bay

Top reasons to visit Mission Bay

  • Stunning Beaches: Mission Bay boasts beautiful sandy shores perfect for sunbathing and relaxation.
  • Outdoor Adventures: Engage in thrilling activities such as whale watching, sailing, and various water sports.
  • Family-Friendly Attractions: Enjoy a range of activities suitable for all ages, enhancing your holiday experience.
  • Parks and Nature: Explore urban parks and scenic areas, ideal for leisurely strolls and picnics.
  • Diverse Accommodation: Choose from a variety of lodgings, catering to both families and adventure seekers.

Find great hotels near Mission Bay

Mission Bay offers a delightful selection of lodgings, from charming motels to modern hotels, catering to both adventurous travellers and families. With amenities designed for pet-friendly stays and accessible rooms, you’ll find the perfect accommodation to suit your needs. Whether you seek a relaxing getaway or an action-packed holiday, Mission Bay’s hotels promise a memorable experience for everyone.

  • Days Inn by Wyndham San Diego Hotel Circle: Situated a mere 6.4km from Mission Bay, Days Inn by Wyndham San Diego Hotel Circle is a charming 3-star hotel that caters to both business travellers and adventure seekers. This LGBTQIA-friendly property offers a vibrant atmosphere for those looking to experience exhilarating activities. Guests can enjoy a plethora of water sports including kayaking, parasailing, and snorkelling, all in close proximity. The hotel features comfortable accommodations and a welcoming environment, making it an excellent choice for those seeking a blend of leisure and adventure.
  • Best Western Seven Seas: Also located 6.4km from Mission Bay, Best Western Seven Seas is a delightful 3-star hotel perfect for families and business visitors alike. With a variety of amenities tailored for children, including cribs at no extra charge, it ensures a comfortable stay for families. Guests can take advantage of nearby adventure sports such as mountain biking and waterskiing. The hotel’s friendly service and convenient location make it an ideal base for exploring the surrounding attractions while enjoying a range of recreational activities.
  • The Dana on Mission Bay: Just 1.6km from Mission Bay, The Dana on Mission Bay is a 3.5-star hotel known for its pet-friendly policies and adventurous spirit. This LGBTQIA-welcoming property provides a range of activities, from waterskiing onsite to skydiving nearby. With amenities designed for both pets and their owners, including food and water bowls, it creates a home-away-from-home environment. Guests can enjoy stunning bay views while indulging in a myriad of water sports, making it a perfect retreat for those who seek both relaxation and excitement.

Where to stay near Mission Bay

Mission Bay, San Diego, offers a delightful blend of family-friendly experiences and scenic beauty. Visitors can explore the picturesque beaches of Mission Beach, enjoy the relaxed beachy vibe, and stroll around the acre peninsula. The area is perfect for discovering friendly local communities, rich history, and budget-friendly options, making it an ideal destination for families seeking both adventure and relaxation.

  • San Diego: As the vibrant city that envelops Mission Bay, San Diego offers a blend of family-friendly activities and outdoor adventures. With a steady influx of visitors year-round, the city shines brightest from March to April and during the summer months of July. San Diego is renowned for its stunning beaches, educational attractions, and expansive shopping centres. Highlights include the famous SeaWorld theme park and the beautiful beaches that cater to families looking for fun in the sun. The city's diverse culture and array of dining options further enhance the travel experience, making it a perfect base for exploring the surrounding coastal areas.
  • La Jolla: Located a mere 8.0km from Mission Bay, La Jolla is a picturesque coastal town known for its breathtaking views and upscale atmosphere. With visitor numbers peaking from June to August, La Jolla attracts those seeking a blend of outdoor activities and family experiences. The area is dotted with stunning beaches, such as La Jolla Shores, and offers unique attractions like the La Jolla Cove, where visitors can often spot seals basking in the sun. Shopping centres and local boutiques provide ample opportunities for retail therapy, while the charming coastal paths encourage leisurely strolls with picturesque ocean views.
  • Mission Beach: Just 3.2km from Mission Bay, Mission Beach is a lively neighbourhood that epitomises the Southern California beach lifestyle. With peak visitor numbers from June to August, this area is a haven for families and outdoor enthusiasts alike. The iconic boardwalk stretches along the coastline, perfect for walking, cycling, or rollerblading, while the nearby amusement park adds a touch of excitement for all ages. Visitors can enjoy the vibrant atmosphere of the tourist precinct, complete with shops and eateries, all set against the backdrop of golden sandy beaches, making Mission Beach a must-visit destination.

Things to do near Mission Bay

Mission Bay in San Diego offers a plethora of activities, including whale watching and dolphin encounters, providing a thrilling experience for nature enthusiasts. Visitors can engage in active recreation such as advanced sailing and various adventure sports, ensuring a memorable holiday. With numerous activity options available, Mission Bay stands out as a vibrant destination for those seeking excitement and entertainment in sunny Southern California.

Shopping

For a delightful shopping experience in Mission Bay, visit Ocean Beach Farmers Market, just 4.8km away, offering local produce and crafts. Also, check out Mission Valley Mall, located 8.0km from Mission Bay, featuring a variety of shops and entertainment options. If you're up for a drive, The Cave Store is 9.7km away.

Recreation

At De Anza Cove Park, immerse yourself in nature with tranquil walks and peaceful picnics, perfect for relaxation. While Petco Park offers an energetic atmosphere with thrilling sports events, The Rady Shell at Jacobs Park provides a vibrant backdrop for live music, enhancing your entertainment experience.

Adventure

Explore your tennis skills at Barnes Tennis Center, located 3.2km from Mission Bay, where the atmosphere buzzes with energy. Alternatively, enjoy the scenic Bayshore Bikeway, 9.7km away, perfect for cycling or leisurely walks amidst beautiful landscapes. For more tennis, try Coronado Tennis Center, 11.3km from Mission Bay.

Nightlife

Experience the vibrant nightlife of Mission Bay by visiting the Old Globe Theater for a touch of romance and culture, or enjoy the outdoor fun at Balboa Park Carousel. For thrill-seekers, Boomers San Diego offers an adventurous arcade experience, perfect for an exciting evening out.

*Distances are measured in a straight line; actual driving distances may vary depending on the route.

Booking tips and Expedia advantages for Mission Bay

To save money on your visit to Mission Bay, plan your trip between November and January, when accommodation prices are lower, and aim to book your stay on a Tuesday for the best rates. Utilise Expedia's search tool to find budget-friendly hotels and consider eco-certified options for added savings. Combining your hotel, flights, and activities into a package can further reduce costs. For transportation, explore the area on foot or use public transport to keep expenses down, as many attractions are easily accessible.

  • The most and least expensive months on average to stay in a hotel: The cheapest months to stay around Mission Bay are November to January, where the prices are slightly lower. This is in comparison to June to August, where prices are slightly higher.
  • The most and least expensive days on average to stay in a hotel: The least expensive day to stay around Mission Bay is Tuesday. The most expensive day to stay around Mission Bay is Saturday.
  • Find cheap hotels on Expedia: Expedia’s search tool enables you to specify your budget, preferred location, and additional criteria. You have the option to sort the results by price, allowing you to view the most affordable hotels first. Furthermore, you can refine your search by hotel type; for instance, selecting the Eco-certified filter will showcase sustainable and environmentally-friendly hotels that are available for booking.
  • Consider bundling your trip: You can potentially reduce your expenses by combining your hotel reservations in Mission Bay with your flights and activities through an Expedia package.

Find the best attractions near Mission Bay

Mission Bay in San Diego offers a delightful array of attractions, including stunning beaches, urban parks, and a maritime museum. These points of interest cater to travellers seeking cultural experiences, outdoor adventures, and family-friendly activities. Whether you're lounging on the sandy shores or exploring the vibrant local parks, Mission Bay promises a memorable getaway filled with diverse experiences.

  • Mission Beach: Experience the quintessential Californian beach vibes at Mission Beach. With its golden sands, lively boardwalk, and stunning sunsets, it's perfect for sunbathing, surfing, or enjoying a stroll along the shore.
  • Hotel Circle: Enjoy the vibrant city vibes along Hotel Circle, a hub of hotels and restaurants. Its central location makes it easy to explore nearby attractions, offering a blend of comfort and convenience for your stay.
  • University of San Diego: Explore the picturesque campus of the University of San Diego, known for its stunning architecture and beautiful gardens. The modern college atmosphere provides a unique backdrop for leisurely walks and cultural experiences.

The nearest major airports for your trip to Mission Bay

For your visit to Mission Bay, SAN Diego, you can fly into several major airports. San Diego International Airport (SAN) is located 6.4km away, with nearby hotels such as the 5-star Pendry San Diego and The US Grant, both within 4.8km of the airport. Tijuana International Airport (TIJ) is 35.4km away, with excellent options like the 4.5-star Real Inn Tijuana and Hotel Lucerna, both just 4.8km from the airport. Alternatively, Carlsbad McClellan-Palomar Airport (CLD) is 26.4km away, featuring hotels like the luxurious Park Hyatt Aviara Resort, only 3.2km from the airport. Each airport offers convenient access to Mission Bay.

Frequently asked questions

What's the area like around Mission Bay?
Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 45 hotels and other accommodation options you'll find within a mile.
What's the best place to stay near Mission Bay?
Paradise Point Resort & Spa is one of the top choices for your stay based on our traveller data, and this resort offers a marina and 5 outdoor pools. It's located just a short 0.8 mi (1.3 km) from Mission Bay. Another good option is San Diego Mission Bay Resort, located just 0.9 mi (1.5 km) away.
How many hotels will I find near Mission Bay?
Expedia has 45 hotels and other accommodation options within a mile from Mission Bay.
If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?
Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.
What can I see and do near Mission Bay?
Study the collections at Maritime Museum of San Diego, Junipero Serra Museum or Whaley House Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.

Explore a world of travel with Expedia