Marathon Boot Key Harbor Hotels: 2026 Limited-Time Hotel Deals @Expedia

Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

2.2 km from Boot Key Harbor

Cheryl

HK$2,101 total

includes taxes & fees

8 Jun - 9 Jun

Captain Pips Marina & Hideaway

1.2 km from Boot Key Harbor

sam

HK$1,244 total

includes taxes & fees

4 Jun - 5 Jun

On the beach, beach cabanas, sun-loungers

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

0.8 km from Boot Key Harbor

Ana M

HK$2,239 total

includes taxes & fees

9 Jun - 10 Jun

On the beach, sun-loungers, beach umbrellas, beach towels

Isla Bella Beach Resort & Spa

2.4 km from Boot Key Harbor

Anna

HK$2,549 total

includes taxes & fees

29 Jun - 30 Jun

Premium bedding, soundproofing, iron/ironing board, free WiFi

Knight's Key Suites

2.7 km from Boot Key Harbor

Raghavan

HK$1,039 total

includes taxes & fees

10 Jun - 11 Jun

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

1 km from Boot Key Harbor

Kenier

HK$1,799 total

includes taxes & fees

16 Jun - 17 Jun

Skipjack Resort & Marina

1.7 km from Boot Key Harbor

Randall

HK$1,896 total

includes taxes & fees

18 Jun - 19 Jun

Tropical Cottages

2.9 km from Boot Key Harbor

Andrea

HK$970 total

includes taxes & fees

7 Jun - 8 Jun

Banana Bay Resort & Marina

1.6 km from Boot Key Harbor

Felix

HK$1,437 total

includes taxes & fees

2 Jul - 3 Jul

Tranquility Bay Beachfront Hotel and Resort

0.7 km from Boot Key Harbor

maybelis

HK$2,881 total

includes taxes & fees

28 Jun - 29 Jun

Aqua Lodge Rentals At Coconut Cay

3.9 km from Boot Key Harbor

Stephanie

HK$3,120 total

includes taxes & fees

7 Jun - 8 Jun

Private beach, sun-loungers, beach towels, kayaking

Seascape Resort & Marina

4.1 km from Boot Key Harbor

Jeffrey

HK$1,968 total

includes taxes & fees

16 Jun - 17 Jun

Kingsail Resort

3.6 km from Boot Key Harbor

Yaiquimi

HK$877 total

includes taxes & fees

24 Jun - 25 Jun

Bonefish Bay Motel

8.1 km from Boot Key Harbor

Han

HK$1,049 total

includes taxes & fees

8 Jun - 9 Jun

Coconut Cay Resort & Marina

3.7 km from Boot Key Harbor

Donald

HK$1,284 total

includes taxes & fees

25 Jun - 26 Jun

Fairfield Inn & Suites by Marriott Marathon Florida Keys

8.3 km from Boot Key Harbor

peggy

HK$1,490 total

includes taxes & fees

9 Jun - 10 Jun

Hampton Inn Marathon - Florida Keys

8.5 km from Boot Key Harbor

Norma

HK$1,366 total

includes taxes & fees

14 Jun - 15 Jun

2 outdoor pools, open 8 AM to 9 PM, pool umbrellas, pool loungers

Glunz Ocean Beach Hotel & Resort

8.3 km from Boot Key Harbor

Angus

HK$1,915 total

includes taxes & fees

9 Jun - 10 Jun

Grassy Flats Resort & Beach Club

15.6 km from Boot Key Harbor

Shonlyn

HK$2,364 total

includes taxes & fees

4 Jun - 5 Jun

Siesta Motel

3.9 km from Boot Key Harbor

EDHAYA CHANDRAN

HK$893 total

includes taxes & fees

4 Jun - 5 Jun

View all properties

Compare popular hotels close to Boot Key Harbor

Property	Property class	Guest rating
Yacht Haven Marina	3.5 star property	9.6 Exceptional 319 reviews	View
Captain Pips Marina & Hideaway	3.0 star property	9.0 Wonderful 1,002 reviews	View
Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys	3.0 star property	9.0 Wonderful 1,002 reviews	View
Isla Bella Beach Resort & Spa	5.0 star property	9.2 Wonderful 1,167 reviews	View
Knight's Key Suites	3.0 star property	9.0 Wonderful 1,199 reviews	View

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

4/10 Poor

"We recently stayed here for a week and there were a few things prospective guests should know. First, the resort places a $1,200 hold on your card for the duration of your stay. We were surprised by this because it was not clearly disclosed during the booking process. Second, if you’re booking this property primarily for the beach, you may want to adjust your expectations. We found the beach area to be muddy with an unpleasant odor, which was disappointing and significantly different from what we anticipated. The beds were also uncomfortable. We could feel the mattress springs, and getting a restful night’s sleep was difficult. While the property itself has some nice features, these issues had a significant impact on our overall experience. Unfortunately, we left feeling disappointed given the cost of the stay and our expectations."

Banana Bay Resort & Marina

4/10 Poor

"The website was misleading. There was no bar out by the pool. The bar by the oceanfront was supposed to serve food according to the website, but it didn’t. It was only open from 5 to 8. The room had a really bad smell coming out of the air conditioner which maintenance tried to fixed by cleaning the filter, but they just sprayed stuff in it to make it smell fruity for about a day then it went away and went back to the smell. I was there for six nights, smelling it the drain in the bathroom in the shower. Also had a terrible smell coming from it so I will not be going back to the banana day. also, I forgot that they charge you $19 a day for parking which I thought was ridiculous because they weren’t even over booked so there was plenty of parking. It seemed to me like it’s just another way to get more money."

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

6/10 Okay

"The hot tub was not on the property but was accessible through the property next-door, which was a little bit of a walk. Would have given it five stars if it wasn’t for the terrible individual at check-in. I don’t remember his name, but he stayed in the room in the back, not in the front where he belonged. He checked me into a room with no view actually a view with the wood fence could not see anything it felt like a prison cell. Call down to change room and was given a room on the third floor with a much better view of the pool problem solved, but it was and seemed like he didn’t care at all about my concerns or needs. I then ask for two robes to be sent to my room and you sent me two rolls of toilet paper instead so obviously there’s something seriously wrong with somebody who doesn’t care to listen to what you’re saying or your needs. Other than that overall I would go back knowing that I would have to deal with this moron again."

Wow!!! Deep Water Canal, Swimspa Pool, Kayaks, Walk to Ocean Front Tiki Bar!!

10/10 Excellent

"I cannot recommend this property enough . The house was pristine, check in is simple, the location is awesome right in the middle of everything but on a very quiet street. The swim spa felt awesome after a long day of sightseeing. The lot across the road was great to hang out at. We used the kayaks almost every day to fish which was a blast lots of small barracuda,tarpon,snapper even a few shark snapped us off. On the very last evening a mom and baby manatee hung out for a bit in the canal.Kathy is very quick to respond. 10/10"

Ocean Side Waterfront Exclusive Affordable Home - Pool , Tennis, Fishing & Golf

10/10 Excellent

"This was our 3rd time staying at this property! We absolutely love it here! Prime location- close to Sombrero beach and Publix. The kids spend countless hours fishing off the sea wall. The kitchen's have everything we need for cooking during our stay. 10/10 recommend "

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

4.6/5 (946 reviews)

Explore the campus of The Turtle Hospital as part of your travels around Marathon. Stroll along the area's marina or simply savour its seafood restaurants.

See properties

Frequently asked questions

What's the area like around Boot Key Harbor?

Boot Key Harbor is located in Marathon. Travellers love the area for its beautiful beaches, top seafood restaurants and dolphin watching opportunities. If you're looking for a convenient place to stay, take a look at the 212 hotels and other accommodation options you'll find within a mile.

Where is the best place to stay near Boot Key Harbor?

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys is one of the top choices for your stay based on our traveller data, and this hotel offers 2 outdoor pools and 2 bars. It's located just a short 0.5 mi (0.8 km) from Boot Key Harbor. Other good options within a short distance include Tranquility Bay Beachfront Hotel and Resort and Faro Blanco Resort Marathon Florida Keys, Curio by Hilton.

How many hotels will I find close to Boot Key Harbor?

Expedia has 212 hotels and other accommodation options within a mile from Boot Key Harbor.

If I need to cancel the hotel reservation for my stay near Boot Key Harbor, will I receive a refund?

Yes! Most hotel reservations are refundable provided that you cancel before the accommodation's cancellation deadline, which in most cases is within 24 or 48 hours of your arrival date. If you have a reservation that's non-refundable, it might still be possible to cancel it and be given a refund within a 24-hour period of your booking. Add dates, click "Search", then filter by "fully refundable" to review top deals close to Boot Key Harbor.

What can I see and do near Boot Key Harbor?

Lounge by the water at Sombrero Beach and Sunset Park Beach. Attractions like Shady Palm Art Gallery and Crane Point Museum and Nature Center highlight the local culture. Explore nature at Vaca Key and Pigeon Key.

Marathon Boot Key Harbor Hotels

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Our top choices for Boot Key Harbor hotels

Yacht Haven Marina

Captain Pips Marina & Hideaway

Courtyard by Marriott Faro Blanco Resort, Marathon Florida Keys

Isla Bella Beach Resort & Spa

Knight's Key Suites

Faro Blanco Resort Marathon Florida Keys, Curio by Hilton

Skipjack Resort & Marina

Tropical Cottages

Banana Bay Resort & Marina

Tranquility Bay Beachfront Hotel and Resort

Aqua Lodge Rentals At Coconut Cay

Seascape Resort & Marina

Kingsail Resort

Bonefish Bay Motel

Coconut Cay Resort & Marina

Fairfield Inn & Suites by Marriott Marathon Florida Keys

Hampton Inn Marathon - Florida Keys

Glunz Ocean Beach Hotel & Resort

Grassy Flats Resort & Beach Club

Siesta Motel

Compare popular hotels close to Boot Key Harbor

Top Boot Key Harbor Hotel Reviews

Isla Bella Beach Resort & Spa

Hotels near other Boot Key Harbor attractions

The Turtle Hospital

Frequently asked questions